PB3D_tools

Auxiliary tools for easy PB3D usage:

• Run PB3D or POST with run.
• Extract jobs info for parameter scan runs with input file modifications with extract_jobs_info.
• Inspect all running SLURM jobs for current user with inspect_SLURM_jobs.

For easy usage, add directory to $PATH:

echo -e "# add PB3D run tools \nexport PATH=\$PATH:$(pwd)" >> ~/.bashrc

run

Runscript for the PB3D code, written in Python 3.

Features:

• Automatic support for schedulers such as PBS and SLURM.
• Customization through yaml options file.
• Easy parameter scans through input file modifications in a custom file .
• Complementary script extract_jobs_info to extract the eigenvalues for such an input file modification run.

Run

./run -g

to generate a template yaml options file, and see

./run -h

for more information.

extract_jobs_info

Extracts the Eigenvalues of jobs for an input array Can be run with either 1 or 3 arguments:

1. ./extract_jobs_info [RUN FOLDER] for default usage.
2. ./extract_jobs_info [RUN FOLDER] [ARRAY INPUT] [OUTPUT FILE] where for the array input file can be specified, as well as the output file. produced there.

inspect_SLURM_jobs

Inspect all SLURM currently being run by user, with the option to cancel them interactively.