Babel 1.7 (Translator Guppy)

[gaurav]

• Updated RxNorm from 07012024 to 08052024.
• Updated ubergraph_iri_stem_to_prefix_map with additional IRI stems.
• Bug fix: chemicals.write_pubchem_ids() was failing on reaching the end of the file. Rewrote the code to account for this possibility.
• Updated the UMLS leftover output to include the ic, clique_identifier_count, taxa, shortest_name_length and preferred_name fields (still doesn't fix Replace leftover UMLS custom output generation with write_compendia() #126)
• Changed PubChem Compound download from FTP to HTTPS (using wget).
• Added a --timestamping option for wget recursive downloads to try to prevent re-downloading PubMed files if it hasn't changed.
• Updated method to create a prefix map from curies.
• Merged changes from Cell wikidata #329 (this should go away once we merge the PRs before this and then merge it with master)

Should be merged after PR #335.