Usage

Requires Java 8, UNIX, and git.

./nextflow run run.nf -resume 

Or if you want to run on only one dataset:

./nextflow run run.nf -resume --datasetFilter DATASET_NAME 

You can also increase the number of random seeds with

./nextflow run run.nf -resume --nSeeds 10

Adding a Blang model

• Go to directory model. Look at one example in there and use as reference. Create a new sub-directory using the naming convention [model-name].model
• Put the .bl in it
• Add a file blangArguments.txt containing model-specific arguments
• Add a directory called datasets/[name-of-dataset].dataset
• If it's not too big, add the data in there. Otherwise should set up a setup script infrastructure to run a download script in all dataset directory if present
• Add blangArguments.txt for dataset-specific arguments.

Adding a Blang sampler configuration

Just add a line in samplers/blang.samplers.txt for the arguments for that configuration. Each line will be ran with each dataset.

Adding a pyMC or other models

TODO!