Errors linking to ITK libraries during build on CentOS #27
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HI Jeff, Good to hear that you're finding the toolbox useful! As for your errors, the first thing that I would highly recommend doing is updating your CMake version. The latest is 3.9 and you appear to be using 2.8.12.2. You'll probably need to recompile ITK. I have successfully built with ITK 4.10 and 4.11 (Ubuntu) and recently built PETPVC with ITK=4.12.1 under Alpine (see https://hub.docker.com/r/benthomas1984/petpvc/). You seem to be getting lots of dynamic linker errors; are you sure ITK is built correctly? Does |
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Hi Jeff, Did you manage to sort this issue out? Kind regards, Ben |
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Hi Ben,
Sorry to be so slow in replying. Yes, it turned out that updating our cmake
to version 3.6.1 allowed us to install successfully. Our tau PET imaging
manuscript, which uses the PETPVC package (RVC and DIY methods) for
supplementary analyses is now online at HBM, here:
http://onlinelibrary.wiley.com/doi/10.1002/hbm.23874/full
Thanks for all your help!
Jeff
…On Mon, Nov 13, 2017 at 8:23 AM, Ben Thomas ***@***.***> wrote:
Hi Jeff,
Did you manage to sort this issue out?
Kind regards,
Ben
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Hi folks,
We've been having trouble building PETPVC on CentOS--with a couple of different compilers and ITK 4.12.2, we consistently get a bunch of linking errors. We're wondering if you'd recommend particular versions of gcc/g++ or ITK--possibly older than what we have installed here? If you have any suggestions, we'd appreciate them.
Please see below for the full list of errors, as well as details on our OS, ITK version, and compilers. We get similar errors (identical, I think) when compiling with gcc/g++ 4.8.2 and ccmake 2.8.12.2.
Thanks for developing this package--the versatility has been great for our PET processing.
Jeff
OS:
Linux version 2.6.32-696.3.2.el6.x86_64 (mockbuild@c1bl.rdu2.centos.org) (gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ) #1 SMP Tue Jun 20 01:26:55 UTC 2017
ITK:
ITK release 4.12.2 (95f0bb0b264aa131f92db5992d649c4627301efc)
Module_ITKReview is ON.
Our default versions of gcc/g++:
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC)
g++ -v
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC)
Trying to build PETPVC under these conditions gives the following errors:
make
[ 6%] Building CXX object test/CMakeFiles/pvc_compareImages.dir/CompareImages.cxx.o
Linking CXX executable pvc_compareImages
/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkDynamicLoader.cxx.o): In function
itk::DynamicLoader::GetSymbolAddress(void*, char const*)': itkDynamicLoader.cxx:(.text+0xfa): undefined reference toitksys::DynamicLoader::GetSymbolAddress(void*, std::basic_string<char, std::char_traits, std::allocator > const&)'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkDynamicLoader.cxx.o): In function
itk::DynamicLoader::OpenLibrary(char const*)': itkDynamicLoader.cxx:(.text+0x18e): undefined reference toitksys::DynamicLoader::OpenLibrary(std::basic_string<char, std::char_traits, std::allocator > const&)'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkDynamicLoader.cxx.o): In function
itk::DynamicLoader::LastError()': itkDynamicLoader.cxx:(.text+0x51): undefined reference toitksys::DynamicLoader::LastError()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkDynamicLoader.cxx.o): In function
itk::DynamicLoader::CloseLibrary(void*)': itkDynamicLoader.cxx:(.text+0x61): undefined reference toitksys::DynamicLoader::CloseLibrary(void*)'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOGDCM-4.12.a(itkGDCMImageIO.cxx.o): In function
itk::GDCMImageIO::Write(void const*)': itkGDCMImageIO.cxx:(.text+0x4598): undefined reference toitksysBase64_Decode'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOGDCM-4.12.a(itkGDCMImageIO.cxx.o): In function
itk::GDCMImageIO::InternalReadImageInformation()': itkGDCMImageIO.cxx:(.text+0x9c24): undefined reference toitksysBase64_Encode'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<char>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIcEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<char>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x4e): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIcEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0xfb): undefined reference to
vnl_vector<char>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIcEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<char>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x15c): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<unsigned char>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIhEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned char>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x47): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIhEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0xf3): undefined reference to
vnl_vector<unsigned char>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIhEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned char>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x15c): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned char> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIhEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIhEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<short> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIsEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIsEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned short> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayItEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayItEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned int> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIjEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIjEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned long> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayImEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayImEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<long long> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIxEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIxEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned long long> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIyEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIyEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<unsigned short>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayItEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned short>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x49): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayItEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0x1a7): undefined reference to
vnl_vector<unsigned short>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayItEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned short>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x20b): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<unsigned int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIjEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x49): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIjEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0x1b5): undefined reference to
vnl_vector<unsigned int>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIjEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x21b): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<float>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIfEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<float>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x50): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIfEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0x1b5): undefined reference to
vnl_vector<float>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIfEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<float>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x21b): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIiEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x50): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIiEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0x1b5): undefined reference to
vnl_vector<int>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIiEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<int>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x21b): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<short>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIsEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<short>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x49): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIsEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0x1a7): undefined reference to
vnl_vector<short>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayIsEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<short>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x20b): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned short> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayItEEED0Ev[_ZN3itk14MetaDataObjectINS_5ArrayItEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<short> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIsEEED0Ev[_ZN3itk14MetaDataObjectINS_5ArrayIsEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<long long> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIxEEED0Ev[_ZN3itk14MetaDataObjectINS_5ArrayIxEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned long> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayImEEED0Ev[_ZN3itk14MetaDataObjectINS_5ArrayImEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned int> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIjEEED0Ev[_ZN3itk14MetaDataObjectINS_5ArrayIjEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned long long> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIyEEED0Ev[_ZN3itk14MetaDataObjectINS_5ArrayIyEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
itk::MetaDataObject<itk::Array<unsigned char> >::~MetaDataObject()': itkHDF5ImageIO.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIhEEED0Ev[_ZN3itk14MetaDataObjectINS_5ArrayIhEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
bool itk::HDF5ImageIO::WriteMetaArray<unsigned long>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayImEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned long>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x49): undefined reference tovnl_vector::vnl_vector(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayImEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray(std::basic_string<char, std::char_traits, std::allocator > const&, itk::MetaDataObjectBase*)]+0x199): undefined reference to
vnl_vector<unsigned long>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO14WriteMetaArrayImEEbRKSsPNS_18MetaDataObjectBaseE[bool itk::HDF5ImageIO::WriteMetaArray<unsigned long>(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, itk::MetaDataObjectBase*)]+0x203): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<unsigned int>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIjEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned int>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x41): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIjEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xe5): undefined reference to
vnl_vector<unsigned int>::set_size(unsigned long)' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIjEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned int>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0xf4): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIjEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0x136): undefined reference to
vnl_vector<unsigned int>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIjEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned int>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x26a): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIxEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x41): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIxEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xe7): undefined reference to
vnl_vector<long long>::set_size(unsigned long)' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIxEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0xf6): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIxEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0x138): undefined reference to
vnl_vector<long long>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIxEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x266): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<unsigned long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIyEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x41): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIyEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xe7): undefined reference to
vnl_vector<unsigned long long>::set_size(unsigned long)' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIyEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0xf6): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIyEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0x138): undefined reference to
vnl_vector<unsigned long long>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIyEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned long long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x266): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<float>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIfEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<float>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x3e): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIfEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xeb): undefined reference to
vnl_vector<float>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIfEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<float>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x20c): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<unsigned long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataImEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x41): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataImEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xe0): undefined reference to
vnl_vector<unsigned long>::set_size(unsigned long)' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataImEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0xef): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataImEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0x131): undefined reference to
vnl_vector<unsigned long>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataImEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned long>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x245): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<int>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIiEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<int>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x3e): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIiEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xeb): undefined reference to
vnl_vector<int>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIiEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<int>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x20a): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<char>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIcEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<char>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x3a): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIcEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xe7): undefined reference to
vnl_vector<char>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIcEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<char>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x20a): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<unsigned char>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIhEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned char>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x3d): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIhEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xe1): undefined reference to
vnl_vector<unsigned char>::set_size(unsigned long)' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIhEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned char>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0xf0): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIhEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0x132): undefined reference to
vnl_vector<unsigned char>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIhEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned char>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x262): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIsEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x40): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIsEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xdf): undefined reference to
vnl_vector<short>::set_size(unsigned long)' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIsEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0xee): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIsEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0x130): undefined reference to
vnl_vector<short>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataIsEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x25b): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOHDF5-4.12.a(itkHDF5ImageIO.cxx.o): In function
void itk::HDF5ImageIO::StoreMetaData<unsigned short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)': itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataItEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x40): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataItEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0xdf): undefined reference to
vnl_vector<unsigned short>::set_size(unsigned long)' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataItEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0xee): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataItEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits, std::allocator > const&, std::basic_string<char, std::char_traits, std::allocator > const&, unsigned long)]+0x130): undefined reference to
vnl_vector<unsigned short>::~vnl_vector()' itkHDF5ImageIO.cxx:(.text._ZN3itk11HDF5ImageIO13StoreMetaDataItEEvPNS_18MetaDataDictionaryERKSsS5_m[void itk::HDF5ImageIO::StoreMetaData<unsigned short>(itk::MetaDataDictionary*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long)]+0x25b): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKIOTIFF-4.12.a(itkTIFFImageIO.cxx.o): In function
itk::TIFFImageIO::ReadTIFFTags()': itkTIFFImageIO.cxx:(.text+0x15b6): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkTIFFImageIO.cxx:(.text+0x16b7): undefined reference to
vnl_vector<float>::~vnl_vector()' itkTIFFImageIO.cxx:(.text+0x16de): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkTIFFImageIO.cxx:(.text+0x17e7): undefined reference to
vnl_vector<int>::~vnl_vector()' itkTIFFImageIO.cxx:(.text+0x1ad9): undefined reference tovnl_vector::vnl_vector(unsigned long)'itkTIFFImageIO.cxx:(.text+0x1ba7): undefined reference to
vnl_vector<unsigned short>::set_size(unsigned long)' itkTIFFImageIO.cxx:(.text+0x1bb6): undefined reference tovnl_vector::operator=(vnl_vector const&)'itkTIFFImageIO.cxx:(.text+0x1c24): undefined reference to
vnl_vector<unsigned short>::~vnl_vector()' itkTIFFImageIO.cxx:(.text+0x1d77): undefined reference tovnl_vector::vnl_vector(char const*, unsigned long)'itkTIFFImageIO.cxx:(.text+0x1e4e): undefined reference to
vnl_vector<char>::~vnl_vector()' itkTIFFImageIO.cxx:(.text+0x2765): undefined reference tovnl_vector::~vnl_vector()'itkTIFFImageIO.cxx:(.text+0x2847): undefined reference to
vnl_vector<unsigned short>::~vnl_vector()' itkTIFFImageIO.cxx:(.text+0x29ee): undefined reference tovnl_vector::~vnl_vector()'itkTIFFImageIO.cxx:(.text+0x2a84): undefined reference to
vnl_vector<float>::~vnl_vector()' /data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkMetaDataObject.cxx.o): In functionitk::MetaDataObject<itk::Array >::~MetaDataObject()':itkMetaDataObject.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIfEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIfEEED5Ev]+0x29): undefined reference to
vnl_vector<float>::~vnl_vector()' /data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkMetaDataObject.cxx.o): In functionitk::MetaDataObject<itk::Array >::SetMetaDataObjectValue(itk::Array const&)':itkMetaDataObject.cxx:(.text.ZN3itk14MetaDataObjectINS_5ArrayIfEEE22SetMetaDataObjectValueERKS2[itk::MetaDataObject<itk::Array >::SetMetaDataObjectValue(itk::Array const&)]+0x35): undefined reference to
vnl_vector<float>::set_size(unsigned long)' itkMetaDataObject.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIfEEE22SetMetaDataObjectValueERKS2_[itk::MetaDataObject<itk::Array<float> >::SetMetaDataObjectValue(itk::Array<float> const&)]+0x56): undefined reference tovnl_vector::operator=(vnl_vector const&)'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkMetaDataObject.cxx.o): In function
itk::MetaDataObject<itk::Array<int> >::~MetaDataObject()': itkMetaDataObject.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIiEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIiEEED5Ev]+0x29): undefined reference tovnl_vector::~vnl_vector()'/data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkMetaDataObject.cxx.o): In function
itk::MetaDataObject<itk::Array<int> >::SetMetaDataObjectValue(itk::Array<int> const&)': itkMetaDataObject.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIiEEE22SetMetaDataObjectValueERKS2_[itk::MetaDataObject<itk::Array<int> >::SetMetaDataObjectValue(itk::Array<int> const&)]+0x35): undefined reference tovnl_vector::set_size(unsigned long)'itkMetaDataObject.cxx:(.text.ZN3itk14MetaDataObjectINS_5ArrayIiEEE22SetMetaDataObjectValueERKS2[itk::MetaDataObject<itk::Array >::SetMetaDataObjectValue(itk::Array const&)]+0x56): undefined reference to
vnl_vector<int>::operator=(vnl_vector<int> const&)' /data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkMetaDataObject.cxx.o): In functionitk::MetaDataObject<itk::Array >::~MetaDataObject()':itkMetaDataObject.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIcEEED2Ev[_ZN3itk14MetaDataObjectINS_5ArrayIcEEED5Ev]+0x29): undefined reference to
vnl_vector<char>::~vnl_vector()' /data/jet/pcook/bin/petpvc/standardCompiler/itk/lib/libITKCommon-4.12.a(itkMetaDataObject.cxx.o): In functionitk::MetaDataObject<itk::Array >::SetMetaDataObjectValue(itk::Array const&)':itkMetaDataObject.cxx:(.text.ZN3itk14MetaDataObjectINS_5ArrayIcEEE22SetMetaDataObjectValueERKS2[itk::MetaDataObject<itk::Array >::SetMetaDataObjectValue(itk::Array const&)]+0x35): undefined reference to
vnl_vector<char>::set_size(unsigned long)' itkMetaDataObject.cxx:(.text._ZN3itk14MetaDataObjectINS_5ArrayIcEEE22SetMetaDataObjectValueERKS2_[itk::MetaDataObject<itk::Array<char> >::SetMetaDataObjectValue(itk::Array<char> const&)]+0x56): undefined reference tovnl_vector::operator=(vnl_vector const&)'collect2: ld returned 1 exit status
make[2]: *** [test/pvc_compareImages] Error 1
make[1]: *** [test/CMakeFiles/pvc_compareImages.dir/all] Error 2
make: *** [all] Error 2
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