3D UNet Cell Analysis

Part of this repo is for 3D membrane tagged image segmentation

SimpleITK, pytorch, scikit-image, opencv, DenseInferenceWrapper

python hist_match.py
python predict.py
python postprocessing.py

Name		Name	Last commit message	Last commit date
Latest commit History 22 Commits
ckpts/cell		ckpts/cell
experiments		experiments
logs		logs
utils		utils
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
celldataset.py		celldataset.py
group.py		group.py
groupnorm.py		groupnorm.py
hist_match.py		hist_match.py
losses.py		losses.py
main.py		main.py
model.py		model.py
postprocessing.py		postprocessing.py
predict.py		predict.py