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Update 20240520 #201

Merged
merged 16 commits into from
May 21, 2024
Merged

Update 20240520 #201

merged 16 commits into from
May 21, 2024

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erinyoung
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Moderate update

  • "under the hood" uses some different channels because sometimes spades doesn't fail, but then also doesn't create a consensus fasta file
  • updates panaroo to 1.5.0
  • updates iqtree2 to 2.3.1
  • updates mlst to 2.23.0-2024-05-01
  • updates amrfinder to 3.12.8-2024-05-02.2
  • updates datasets to 16.15.0

@erinyoung
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Replaces #198

@erinyoung
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Closes #200
Closes #199

@erinyoung erinyoung merged commit 582df26 into main May 21, 2024
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@erinyoung erinyoung deleted the update20240520 branch July 26, 2024 15:30
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@erinyoung