Add support for Nextflow version 22.03.0-edge and later #43
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Cecilia-Sensalari
changed the title
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR addresses compatibility issues with Nextflow. ksrates's Nextflow pipeline (
main.nf) is written in DSL1 syntax, but Nextflow version22.03.0-edgeand later are using DSL2 as default. Eventually Nextflow version22.10.xwill be the last one still supporting DSL1.This PR prepares for ksrates release
v.1.1.3by requiring Nextflow to use DSL1 as syntax inmain.nfso that it can be launched also from22.03.0-edgeuntil22.10.xincluded. Documentation is updated concerning this compatibility issue.This will close #39.