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1. Hromada_et_al_2021 Hromada_et_al_2021 Public

   MATLAB

2. Clark_et_al_2021 Clark_et_al_2021 Public

   Jupyter Notebook

3. Ostrem_Loss_et_al_2022 Ostrem_Loss_et_al_2022 Public

   Growth limitation via chemically complex carbohydrates reduces sensitivity of synthetic human gut communities to perturbations

   Jupyter Notebook

4. Baranwal_et_al_2022 Baranwal_et_al_2022 Public

   PyTorch Implementation of LSTM-based dynamical model for predicting species abundance and metabolite concentrations in a heterogeneous community

   Jupyter Notebook 1 1

5. Thompson_et_al_2023 Thompson_et_al_2023 Public

   Microbiome Recurrent Neural Network (MiRNN)

   Jupyter Notebook