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Hi,
I've slightly adapted your code, so it can also be used for calculating the 3D MOT scores. Wanted to use it to benchmark the APIDIS dataset and your code was the only I could find that was easy to read and change. I've basically added a boolean member variable to the class MOTEvaluation, and by setting this variable to true or false it is possible to switch between using the overlap of the bounding boxes and the euclidean distance for calculating the MOTP and MOTA scores. I've also created a new branch for my version of the code, so you can leave your master branch unchanged. So if you think my contribution would be useful would be great if you would add it to your repository.
Stratos