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Document Examples #170

Merged
merged 15 commits into from
Aug 11, 2022
Merged

Document Examples #170

merged 15 commits into from
Aug 11, 2022

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dzalkind
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@dzalkind dzalkind commented Apr 6, 2022 •
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Purpose

Adding READMEs for the examples to show users how to run examples. Most examples are set up for testing.

TODO:

  • Add WSL set up/notes, check compilers

Type of change

What types of change is it?
Select the appropriate type(s) that describe this PR

  • Bugfix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (non-backwards-compatible fix or feature)
  • Code style update (formatting, renaming)
  • Refactoring (no functional changes, no API changes)
  • Documentation update
  • Maintenance update
  • Other (please describe)

Testing

Explain the steps needed to test the new code to verify that it does indeed address the issue and produce the expected behavior.

Checklist

Put an x in the boxes that apply.

  • I have run existing tests which pass locally with my changes
  • I have added new tests or examples that prove my fix is effective or that my feature works
  • I have added necessary documentation

@dzalkind dzalkind mentioned this pull request Jun 22, 2022
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@dzalkind dzalkind marked this pull request as ready for review August 10, 2022 20:00
mayankchetan
mayankchetan reviewed Aug 10, 2022
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Looks good to me!

@dzalkind dzalkind merged commit f9360e9 into WISDEM:develop Aug 11, 2022
@dzalkind dzalkind deleted the doc_examples branch August 11, 2022 17:06
dzalkind added a commit that referenced this pull request Jan 19, 2024
@dzalkind
Squashed 'ROSCO/' changes from 6c2807a9e..b994e4de6
0fd984b 
b994e4de6 ROSCO v2.9.0 (#304)
REVERT: 6c2807a9e Merge remote-tracking branch 'upstream/develop' into v2.9.0_prep
REVERT: 7fa1ae25e Don't check ZMQ period if no ZMQ_Mode
REVERT: 4cdef25d4 Merge pull request #300 from NREL/smart_lib_path
REVERT: b1c943ea0 fixes for windows
REVERT: 8c39105a3 hopefully caught everything
REVERT: 2d0525830 switch to cmake-build-extension and logic for finding rosco library path
REVERT: 45aad140c Add more error checking in checkpoint file I/O
REVERT: c5de22f59 Modernize setup and CI (#297)
REVERT: 92e2ac5ab Reorganize Repo (#294)
REVERT: 6a3b194ac Merge pull request #164 from dzalkind/f/exclusion_zone
REVERT: fb5c43de3 Skip upload of artifacts
REVERT: eed259db9 Update toolbox input rst
REVERT: 9d97bc285 Revert IEA yaml
REVERT: 173a91580 Remove extra update_discons
REVERT: 4f7d27376 Separate TD and TRA control modes
REVERT: 77255d15a Rename TRA example, add to CI testing
REVERT: 2decc8166 Add ZMQ_ID to api change
REVERT: 1e455a0e8 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: f93f28162 Add clarification on fastcall
REVERT: 69da72105 Change guidance in api reference
REVERT: ef5aa138c Add signals to IO and Types
REVERT: 3c9e00fb0 Add PC_RefSpd interim signals
REVERT: b2acd3efb Clean up PRC example
REVERT: 2b0f88223 Set up TRA example
REVERT: 05ed0f4df Wind Farm Control Interface (#280)
REVERT: 47dd2d61e Update API docs
REVERT: be4753b5f Revert PC_PitComC to T
REVERT: 7d6b45a03 Try apt-get update
REVERT: a681eb7ef Update toolbox docs
REVERT: 5b38681c1 Clean up inputs further
REVERT: 9d5e21a7e Clean up Twr_ variables and names names
REVERT: f71b8ec04 Rate limit set point, needs clean up
REVERT: c75738eee Modified ZeroMQ interface to include pitch offsets (#261)
REVERT: a610e55eb Better Open Loop Control Error Catching (#273)
REVERT: dd01047c5 Update .readthedocs.yaml remove old python version
REVERT: 8693d4ba4 Update .readthedocs.yaml
REVERT: 328d29e7d Update .readthedocs.yaml with version key
REVERT: c4790340d Update .readthedocs.yaml with another python version
REVERT: 04d3f5284 Update .readthedocs.yaml with new python version
REVERT: 80973fe16 Update .readthedocs.yaml with python 3.9
REVERT: 6f1ccfa33 Update .readthedocs.yaml with other build options
REVERT: f2a624db1 Update .readthedocs.yaml with build.os
REVERT: 0e800947d Update api_change.rst formatting
REVERT: b66cd1170 Add types to scalars (#264)
REVERT: 31b7cc823 Update API docs
REVERT: 9ca681b3c Clean up more old TD_Modes
REVERT: 3c0c800ca Add Twr_Mode error catching and warnings
REVERT: 93b16623f Remove TD_Mode, regen inputs, docs
REVERT: 2c76747fa Increase max file unit (#253)
REVERT: 4ebd1350f Clean up types, make band total width of band
REVERT: b10ec71b2 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 25cf21977 Re-work exclusion zone with simpler implementation
REVERT: 989ce5ba9 Merge pull request #170 from dzalkind/power_ref_tracking
REVERT: e75baa29a Remove pCrunch notebook
REVERT: 3b0bde0fa Update PRC example with PRC_GenSpeeds
REVERT: 32292e588 Bring back saturation of torque reference speed
REVERT: d9a31fb76 Document API changes
REVERT: 38f27def4 Add LPF on WSE for speed selection, use gen speed rather than rotor
REVERT: b817a5ca8 Bring back new VS_ControlMode that merge lost
REVERT: 3092e387b Tidy example documentation, output
REVERT: 24052dc20 Revert run_FAST cases
REVERT: b5eb5c0ad Use updated DISCON writing functions for PRC inputs
REVERT: ea55560f7 Shorten PRC example
REVERT: b27629b3d Rename power ref example
REVERT: 716b2e46d Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 63bcb0d4b Extend ROSCO for MHK (#257)
REVERT: 31332d923 Update .readthedocs.yaml to remove use of 'system_packages' as it is being depreciated by readthedocs (#258)
REVERT: c641b54a6 Rotor Position Control (#255)
REVERT: 178217bb1 Regenerate registry, inputs
REVERT: d9547ddcd Fix relative Cp filepaths
REVERT: 9de385b3c Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 273af277d Regen registry, discons
REVERT: fef92431b Fix relative Cp filepaths
REVERT: d4d4cb261 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 2f069daec Floating Feedback Gain Scheduling (#241)
REVERT: c701f6776 OpenFAST 3.5.0 (#246)
REVERT: e5b1af538 Yaw Rate Bug Fix (#239)
REVERT: 5fd97e254 Increment version number
REVERT: 12f8fdb4b Merge remote-tracking branch 'upstream/main' into develop
REVERT: 90357a2cd Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 23879c815 Remove old TD_Mode references
REVERT: 1c644ecde Update TRA example
REVERT: 0dc1ad0c1 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 79426f799 Increment version number
REVERT: 339ad5391 Tidy example output
REVERT: 585e2c8b1 Open loop platform control (#236)
REVERT: 24bded08f Add note about offset
REVERT: 60b366d0a Revert openfast changes
REVERT: ac14b174d Init PC_RefSpeed if no PRC
REVERT: de15e52d4 Various bug fixes (#233)
REVERT: 766941943 Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 8a39f3cc7 Update example with ramp, reference
REVERT: 5a7046f70 Active Wake Control (#230)
REVERT: 099532bc7 Finish merge with awc inputs and registry
REVERT: f1037ec6e Merge remote-tracking branch 'origin/awc' into power_ref_tracking
REVERT: 9e5fd58cd Add PRC example
REVERT: e49f3837d Add latest plot_FAST notebook
REVERT: 1e38c90d7 Update IPC example for testing sat modes
REVERT: 52e370867 Finish merge with inputs and registry
REVERT: fe2470475 Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: fbb44c4b2 Add IPC gain to NREL2p8
REVERT: 5afb385bd Parallelize output processing
REVERT: 90c40416b Add optimized NREL2p8 controller input
REVERT: 820aa6630 Merge pull request #2 from kbrown1snl/patch-2
REVERT: 728c61da3 Update 20_active_wake_control.py
REVERT: 17ce1a5c4 Merge remote-tracking branch 'jfred/patch-1' into awc
REVERT: bc3341760 Update api_change.rst
REVERT: 8e4cf8b24 Allow more than 99 local variables in dbg2
REVERT: 7f12c9c92 Clean up comments
REVERT: 9d7e18de4 Tidy file writing
REVERT: 3851a6baf Remove lingering comment
REVERT: e02379d93 Remove AWC references from IPC
REVERT: 50bd08c19 Tidy up IPC, allow AWC and IPC with warning
REVERT: 50f419119 Update error message
REVERT: 1e25c88ae Fixed bug in added AWC input checks.
REVERT: bd4d7d5d9 Added checks for AWC inputs.
REVERT: cae3f1733 Updated AWC input parameters.
REVERT: 2947b4f10 Dylib -> so in Test_Cases
REVERT: e1379de0a Run ROSCO_testing from anywhere
REVERT: de8d228a6 Fix input file writing, force into int in write_array
REVERT: 5e75601ca Make AWC_n a list, too
REVERT: c1e4be785 Force AWC_n into int better
REVERT: 4194da43f Force AWC_n into int
REVERT: e4d7ec259 Tidy input writing, remove `future` references
REVERT: 74c7fcbfe Rename methods in readme
REVERT: 4e2a77833 Remove duplicate PF_Offsets input read
REVERT: ca7c44d8e Tidy print statements, file writing
REVERT: daf77e943 Merge remote-tracking branch 'ndev/rosco_awc_merge' into awc
REVERT: 8ea0a4c97 Merge remote-tracking branch 'jfred/AWC_NREL' into awc
REVERT: 87cde8c52 Merge remote-tracking branch 'upstream/develop' into awc
REVERT: 1ccc1b36b Platform control and Optional Inputs (#227)
REVERT: e8996003c Updated Coleman Transformation based AWC
REVERT: b2fdfbcf9 Update AWC_Mode descriptions
REVERT: b17f35005 Add 2.8 to update_discons, regenerate DISCON Should match closely to original DISCON
REVERT: 4604ebbee Add 20_awc to test_examples
REVERT: a9ec14e98 Update all DISCONs
REVERT: b24f07b6f Merge remote-tracking branch 'upstream/develop' into awc
REVERT: 70d5771c8 Fix file writing in AWC section
REVERT: 687b7603e Undo unintentional changes to wrie_registry.py
REVERT: 3bc2185ce Added NREL-developed AWC-implementation
REVERT: ff0ce39cf Update rosco_types.yaml
REVERT: 797e5544e Update utilities.py
REVERT: 826ca01fb Update toolbox_schema.yaml
REVERT: b141c4e04 Update 20_active_wake_control.py
REVERT: baaa8db06 Update ReadSetParameters.f90
REVERT: 5c878add4 Update ROSCO_Types.f90
REVERT: ae5090b5c Update Controllers.f90
REVERT: 32dc9fd8a Update NREL-2p8-127_DISCON.IN
REVERT: 46e7168d8 Update 20_active_wake_control.py
REVERT: 87b3f09c5 Revert setup directory
REVERT: de3a6fe44 Tidy up DISCON file writing
REVERT: de16ecdda Test all AWC cases in example 20
REVERT: cabbb2adc Merge pull request #1 from kbrown1snl/patch-1
REVERT: 1824f991a Fix units in schema
REVERT: f6d061f87 Update 20_active_wake_control.py
REVERT: a7d33035f Merge remote-tracking branch 'upstream/main' into develop
REVERT: 83022e586 Prep for more modes
REVERT: 3c40565ea Formatting fixes
REVERT: d93d44321 Update AWC example with instructions/theory
REVERT: 2bb01760d Tidy example
REVERT: 1693602fb Add AWC to toolbox schema
REVERT: 1201a6672 Update other DISCONs
REVERT: cc4080d03 Tidy up input additions
REVERT: da46fac31 Set min pitch for AWC
REVERT: 5c5333b12 Remove LocalVar%PC_MinPit = CntrPar%PC_MinPit, breaking setpoint smoother
REVERT: b102b34d2 Update example to point to correct inputs
REVERT: 80bd691ac Add AWC_Mode and move AWC into subroutine
REVERT: d05ef6c7a Merge branch 'develop' into rosco_awc_merge
REVERT: 2f941e38f Merge remote-tracking branch 'upstream/main' into develop
REVERT: a4717839d Add initial AWC example, needs OF3.4
REVERT: f5c3c1e5d Add case generation updates
REVERT: 42525a98a V270 prep (#218)
REVERT: a1cf97bbe Rename examples (#215)
REVERT: 20c9c9d1d Adding NREL 2.8 127 for AWC testing
REVERT: 0c0e466a8 Fixes to readsetparams and awc location
REVERT: 3155b63dd Add script for updating DISCON versions (#214)
REVERT: c51ed30ac Removed duplicate pitch assignment and removed MinPitch mods for AWC
REVERT: e554c1da0 IPC Saturation Fix [RAAW] (#210)
REVERT: be28641f1 Allow PA_Mode 1 (#213)
REVERT: 515da1797 Make AWC_complexangle a LocalVar for logging
REVERT: 974e271c7 Separate contribution to PitCom from mode calculation
REVERT: 0575d7527 Re-organize AWC pitch contribution, before actuator
REVERT: 1e802638f Apply DbKi to COMPLEX
REVERT: 0be88d47e Add AWC parameters to registry, regenerate types
REVERT: f5428de80 Merge remote-tracking branch 'upstream/develop' into rosco_awc_merge
REVERT: 721fbf5d1 Use new numpy
REVERT: 15c0603fb Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 05d7b3b94 Compatibility with Numpy v1.24 (#208)
REVERT: 75a648cdf AWC First Version, collected changes
REVERT: b3a8b1cbf Try compilers in macOS build
REVERT: b5c65bdb5 Add example_19 to CI
REVERT: c8d08c11d Fix default Twr_GainTau
REVERT: b1e122985 Allow Twr_Mode of 3 in tuning yaml
REVERT: 591571e76 Add Twr_GainFactor and Twr_GainTau
REVERT: 6881ac098 Add TRA example
REVERT: f7bae0009 Tidy input writer
REVERT: a3aa81fac Separate collective pitch command from total, use in SS
REVERT: b1f78e088 Add VS_RefSpd and PC_RefSpd to LocalVars
REVERT: f2db21273 Tidy up merge with develop
REVERT: a2741f20a Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 9d27a333b OpenFAST v3.3.0 (#202)
REVERT: 5ad1d4109 Doc fix (#200)
REVERT: 827b2814f Update sim.py (#196)
REVERT: 602332eac Various Bug Fixes (#188)
REVERT: 9384f0307 Added feature to read AeroDyn 14 files also for the case without tower influence. (#177)
REVERT: decd69470 Various Bug Fixes (#167)
REVERT: 2efac8480 Adding pitch actuator fault (#163)
REVERT: 34ca985ef Update discons
REVERT: b933b3bab Add rotor speed tracking, test case
REVERT: 86c8acfb2 Update Windows install instructions
REVERT: 778822b5d Add generator efficiency to power output of simple simulation
REVERT: ae7b26748 Update example 05 units
REVERT: 16bd05c66 Clean up TwrControl_Mode
REVERT: 2da1a16ab Change TD_Mode to Twr_Mode
REVERT: eec3d5f23 Merge branch 'develop' into f/exclusion_zone
REVERT: 772e36f96 update discons
REVERT: df919635b Update registry
REVERT: 9bc45ce27 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 40a4edc9f F/zmq (#145)
REVERT: b45fb4300 External Control Interface (#141)
REVERT: 9ca75e1e2 Robust control updates (#139)
REVERT: 0bf504ee3 Pass through (#136)
REVERT: 75e7fb8dc RAAW Updates (#133)
REVERT: 50a2f90e3 Add OpenFAST channels that Simulink reads (#135)
REVERT: 5cdb0b5fb Pitch Actuator and IPC updates (#123)
REVERT: e035a7d95 Flip Ct and Cq table allocation (#130)
REVERT: bd0562cd4 sigma + ipc (#125)
REVERT: d52019231 Update docs to reflect CI process
REVERT: e9c9378e3 Merge remote-tracking branch 'upstream/develop' into develop
REVERT: 4126adbfd Bladed readthedocs (#117)
REVERT: d7d15b044 Update version in API change docs
REVERT: 8c312875c Bladed docs (#116)
REVERT: 5f18bf8c1 Increment version number
REVERT: 9b5499d76 ipc (#105)
REVERT: a857211fa Allow default inputs (#110)
REVERT: 1be503c03 Fix print var type for WE_CP
REVERT: 2d8a9451b Update DISCONs
REVERT: 7e30c4d64 Add exclusion zone to example
REVERT: eb9b901b8 Add exclusion zone mode to
REVERT: a5eb72c35 fix units for exclusion zone
REVERT: d50e23a00 Add twr frequency exclusion zone
REVERT: 38a13da46 add control packageg
REVERT: a9f43b948 Print when finished with ROSCO
REVERT: 58b4e1b5d Update discons - resolve conflict
REVERT: c8b23371f Merge remote-tracking branch 'upstream/develop' into f/ipc
REVERT: 480c7c4ad Disable logging level
REVERT: 3beca3eb9 Clean up, hone in on debug call
REVERT: 5692ab844 Add more debugging lines 2
REVERT: a568be6a5 Add more debugging lines
REVERT: e119569f4 Debug OL reading
REVERT: 0971f300c Set wind speed, rotor speed IC in example 14
REVERT: a362dc473 Fix OL_Input reading
REVERT: 41e0dc6e2 Fix ccrotor inputs (#104)
REVERT: b4c755844 Update DISCONs again
REVERT: db919993c Fix Material parameter path
REVERT: 1dc03765f shorten simulation time
REVERT: 5cb3725e3 Allow IPC to command pitch value below peak shaving saturation limit
REVERT: 07753d8ca Add IPC tuning vars
REVERT: 6caf61ed4 cleanup and streaamline run_examples
REVERT: 1e5398f9f add examples to readme
REVERT: 26bd784e9 Update cp surfaces and DISCONS
REVERT: 7f3d89a3d Add example 13 for IPC
REVERT: e35f20a13 expand pitch_initial to 30 degrees
REVERT: 7760bcd77 update coord reader/writer
REVERT: c1d7908dc Add IEA15MW_OL.yaml
REVERT: 9a75c7114 ignore dbg2 files
REVERT: 280996714 Update Polars to point to coord files
REVERT: b6ba25358 make sure IPC_KP is positive
REVERT: 03f2b761c fix ipc gain printing bug
REVERT: 9bc06254d fix variable names
REVERT: 02e08f7d0 add IPC gains to schema for pass-through ability
REVERT: 86f3a9c4c numerical qualifiers for error handling
REVERT: abd83d731 Add IPC_KP to api changes
REVERT: 844b0693d add CMakeFiles to gitignore
REVERT: 2ade01535 add mutichannel plotting with tuples
REVERT: 7e5e2a3d7 Error checking foro flp or ipc
REVERT: 79e5d5400 Addd IPC_KP to DISCON.IN
REVERT: 0111087a8 Fix comments in ColemanTransformInverse
REVERT: fded9d422 Add cyclic flap conrol
REVERT: dbd81afda Better logic for filtering RootMOOP and fix notch filter slopes bug
REVERT: 5e40ac40f Add IPC and filtered RootMyc to registry
REVERT: 823f5f00f Add proportional control and cleanup IPC
REVERT: 065befa76 Fix performance table paths
REVERT: afca92fce Update surface and DISCON.INs
REVERT: 262d3f6fe rename aerodynblade inputs
REVERT: ee00f6786 remove interpolation of blade chord and twist
REVERT: aad739652 Merge pull request #103 from nikhar-abbas/hf/robust
REVERT: 5d5a9ba82 add bld edgewise freq to robust dict_inputs
REVERT: 93dceb7ed Break up if statement in open loop pitch (#100)
REVERT: 6c1e4dbf1 Restart & registry (#99)
REVERT: 50f686dd2 Open Loop Control (#98)
REVERT: f57ee4553 Merge pull request #97 from nikhar-abbas/b/listcheck
REVERT: 6f16a9da6 update listcheck method for numpy arrays
REVERT: aa888a1fc FOCAL Updates (#64)

git-subtree-dir: ROSCO
git-subtree-split: b994e4de67c423ff598a4bb354657b62ff61a50d
dzalkind added a commit that referenced this pull request Mar 6, 2024
@gbarter @dzalkind
@ptrbortolotti @AthulKrishnaSundarrajan
Restoring Docs PR after Github closed it (#261)
5076e9d 
* Cast raft_cases, so it's easier to save as an input yaml

* fix bug with DT_Out, which is a number, nto a str

* Flush and close OF input files, seems to fix kestrel issue

* Remove numpy from lists of dicts

* Give a cross sectional HD member property to OF at each joint location

* Clean up comment around member cross section properties

* Add documentation for constraints that can come from RAFT/OF

* Ensure some level is enable for rotor_overspeed merit figure

* fix coveralls issue in CI

* Make wave_seeds input consistent

* Fix zeta_max typo

* Add some placeholder doc pages

* Add readthedocs config

* Output total system inertia from RAFT

* Add nacelle accel channels

* Remove old ROSCO

* Squashed 'ROSCO/' content from commit 99c9f872d

git-subtree-dir: ROSCO
git-subtree-split: 99c9f872d9590671be6be1a716ac293467b49e53

* Rename ROSCO_Toolbox imports etc.

* Update example discons

* Update to new Tune_Case directory

* Point to new rosco build directory

* Squashed 'ROSCO/' changes from 99c9f872d..7fa1ae25e

7fa1ae25e Don't check ZMQ period if no ZMQ_Mode
45aad140c Add more error checking in checkpoint file I/O
c5de22f59 Modernize setup and CI (#297)
REVERT: 99c9f872d Merge remote-tracking branch 'upstream/v2.9.0' into v2.9.0
REVERT: c29fc8597 Fix checkpoint testing paths
REVERT: 75c3d2988 F_NumNotchFilts is not allowed to have a default value
REVERT: ba0bc45d0 Update rosco dylib dir
REVERT: 207d3f73e Add Ext_Interface flag

git-subtree-dir: ROSCO
git-subtree-split: 7fa1ae25e6b3866c353d5976e7ac68f597bf73af

* Squashed 'ROSCO/' changes from 7fa1ae25e..6c2807a9e

6c2807a9e Merge remote-tracking branch 'upstream/develop' into v2.9.0_prep
4cdef25d4 Merge pull request #300 from NREL/smart_lib_path
b1c943ea0 fixes for windows
8c39105a3 hopefully caught everything
2d0525830 switch to cmake-build-extension and logic for finding rosco library path

git-subtree-dir: ROSCO
git-subtree-split: 6c2807a9ece26b4b94bc0a78bc4ca8388fba60b0

* Create README.md for example 01

* Add cmake-build-extension

* Save timeseries and iteration data by default

* Simplify openfast_configuration
Remove save iterations/timeseries
Send outputs to same place as analysis outputs

* Remove perf_surface modeling options because they make bad ROSCOs

* Rename optimization example

* Update README.md for 02_control_opt

* Update modeling schema doc page

* Rename 02 example folder

* Rename output folders in 02 examples

* Update example names in tests

* Remove 03 hydro data, should not be necessary anymore

* Point to wisdem geometry

* Remove PotFile

* Simplify 03 single run analysis options, standardize output file

* Standardize 04 example output

* Send 04 OF files to regular output

* Standardize 05 example inputs

* Add readme to example 05

* Point to 05 wisdem input

* Add README for 06 example

* Add README for example 07

* Add README for 08 example

* Add README and tidy 06 example inputs some

* Update test list

* Move comments to 06 README for later use

* Add READMEs

* Tidy up 15_ example inputs

* Rename weis driver in 15_

* Tidy up 13_ example inputs

* Fix path in example 03

* Ensure that ballast rho is distributed with l_fill

* Make BEM dir relative to input files, like most other things

* Make analysis options output relative to input, if it's a relative path

* Add rank_and_file for example 15

* Add simple hst file reader

* Pin pyhams 1.2.1

* Squashed 'ROSCO/' changes from 6c2807a9e..b994e4de6

b994e4de6 ROSCO v2.9.0 (#304)
REVERT: 6c2807a9e Merge remote-tracking branch 'upstream/develop' into v2.9.0_prep
REVERT: 7fa1ae25e Don't check ZMQ period if no ZMQ_Mode
REVERT: 4cdef25d4 Merge pull request #300 from NREL/smart_lib_path
REVERT: b1c943ea0 fixes for windows
REVERT: 8c39105a3 hopefully caught everything
REVERT: 2d0525830 switch to cmake-build-extension and logic for finding rosco library path
REVERT: 45aad140c Add more error checking in checkpoint file I/O
REVERT: c5de22f59 Modernize setup and CI (#297)
REVERT: 92e2ac5ab Reorganize Repo (#294)
REVERT: 6a3b194ac Merge pull request #164 from dzalkind/f/exclusion_zone
REVERT: fb5c43de3 Skip upload of artifacts
REVERT: eed259db9 Update toolbox input rst
REVERT: 9d97bc285 Revert IEA yaml
REVERT: 173a91580 Remove extra update_discons
REVERT: 4f7d27376 Separate TD and TRA control modes
REVERT: 77255d15a Rename TRA example, add to CI testing
REVERT: 2decc8166 Add ZMQ_ID to api change
REVERT: 1e455a0e8 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: f93f28162 Add clarification on fastcall
REVERT: 69da72105 Change guidance in api reference
REVERT: ef5aa138c Add signals to IO and Types
REVERT: 3c9e00fb0 Add PC_RefSpd interim signals
REVERT: b2acd3efb Clean up PRC example
REVERT: 2b0f88223 Set up TRA example
REVERT: 05ed0f4df Wind Farm Control Interface (#280)
REVERT: 47dd2d61e Update API docs
REVERT: be4753b5f Revert PC_PitComC to T
REVERT: 7d6b45a03 Try apt-get update
REVERT: a681eb7ef Update toolbox docs
REVERT: 5b38681c1 Clean up inputs further
REVERT: 9d5e21a7e Clean up Twr_ variables and names names
REVERT: f71b8ec04 Rate limit set point, needs clean up
REVERT: c75738eee Modified ZeroMQ interface to include pitch offsets (#261)
REVERT: a610e55eb Better Open Loop Control Error Catching (#273)
REVERT: dd01047c5 Update .readthedocs.yaml remove old python version
REVERT: 8693d4ba4 Update .readthedocs.yaml
REVERT: 328d29e7d Update .readthedocs.yaml with version key
REVERT: c4790340d Update .readthedocs.yaml with another python version
REVERT: 04d3f5284 Update .readthedocs.yaml with new python version
REVERT: 80973fe16 Update .readthedocs.yaml with python 3.9
REVERT: 6f1ccfa33 Update .readthedocs.yaml with other build options
REVERT: f2a624db1 Update .readthedocs.yaml with build.os
REVERT: 0e800947d Update api_change.rst formatting
REVERT: b66cd1170 Add types to scalars (#264)
REVERT: 31b7cc823 Update API docs
REVERT: 9ca681b3c Clean up more old TD_Modes
REVERT: 3c0c800ca Add Twr_Mode error catching and warnings
REVERT: 93b16623f Remove TD_Mode, regen inputs, docs
REVERT: 2c76747fa Increase max file unit (#253)
REVERT: 4ebd1350f Clean up types, make band total width of band
REVERT: b10ec71b2 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 25cf21977 Re-work exclusion zone with simpler implementation
REVERT: 989ce5ba9 Merge pull request #170 from dzalkind/power_ref_tracking
REVERT: e75baa29a Remove pCrunch notebook
REVERT: 3b0bde0fa Update PRC example with PRC_GenSpeeds
REVERT: 32292e588 Bring back saturation of torque reference speed
REVERT: d9a31fb76 Document API changes
REVERT: 38f27def4 Add LPF on WSE for speed selection, use gen speed rather than rotor
REVERT: b817a5ca8 Bring back new VS_ControlMode that merge lost
REVERT: 3092e387b Tidy example documentation, output
REVERT: 24052dc20 Revert run_FAST cases
REVERT: b5eb5c0ad Use updated DISCON writing functions for PRC inputs
REVERT: ea55560f7 Shorten PRC example
REVERT: b27629b3d Rename power ref example
REVERT: 716b2e46d Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 63bcb0d4b Extend ROSCO for MHK (#257)
REVERT: 31332d923 Update .readthedocs.yaml to remove use of 'system_packages' as it is being depreciated by readthedocs (#258)
REVERT: c641b54a6 Rotor Position Control (#255)
REVERT: 178217bb1 Regenerate registry, inputs
REVERT: d9547ddcd Fix relative Cp filepaths
REVERT: 9de385b3c Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 273af277d Regen registry, discons
REVERT: fef92431b Fix relative Cp filepaths
REVERT: d4d4cb261 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 2f069daec Floating Feedback Gain Scheduling (#241)
REVERT: c701f6776 OpenFAST 3.5.0 (#246)
REVERT: e5b1af538 Yaw Rate Bug Fix (#239)
REVERT: 5fd97e254 Increment version number
REVERT: 12f8fdb4b Merge remote-tracking branch 'upstream/main' into develop
REVERT: 90357a2cd Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 23879c815 Remove old TD_Mode references
REVERT: 1c644ecde Update TRA example
REVERT: 0dc1ad0c1 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 79426f799 Increment version number
REVERT: 339ad5391 Tidy example output
REVERT: 585e2c8b1 Open loop platform control (#236)
REVERT: 24bded08f Add note about offset
REVERT: 60b366d0a Revert openfast changes
REVERT: ac14b174d Init PC_RefSpeed if no PRC
REVERT: de15e52d4 Various bug fixes (#233)
REVERT: 766941943 Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: 8a39f3cc7 Update example with ramp, reference
REVERT: 5a7046f70 Active Wake Control (#230)
REVERT: 099532bc7 Finish merge with awc inputs and registry
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REVERT: 9e5fd58cd Add PRC example
REVERT: e49f3837d Add latest plot_FAST notebook
REVERT: 1e38c90d7 Update IPC example for testing sat modes
REVERT: 52e370867 Finish merge with inputs and registry
REVERT: fe2470475 Merge remote-tracking branch 'upstream/develop' into power_ref_tracking
REVERT: fbb44c4b2 Add IPC gain to NREL2p8
REVERT: 5afb385bd Parallelize output processing
REVERT: 90c40416b Add optimized NREL2p8 controller input
REVERT: 820aa6630 Merge pull request #2 from kbrown1snl/patch-2
REVERT: 728c61da3 Update 20_active_wake_control.py
REVERT: 17ce1a5c4 Merge remote-tracking branch 'jfred/patch-1' into awc
REVERT: bc3341760 Update api_change.rst
REVERT: 8e4cf8b24 Allow more than 99 local variables in dbg2
REVERT: 7f12c9c92 Clean up comments
REVERT: 9d7e18de4 Tidy file writing
REVERT: 3851a6baf Remove lingering comment
REVERT: e02379d93 Remove AWC references from IPC
REVERT: 50bd08c19 Tidy up IPC, allow AWC and IPC with warning
REVERT: 50f419119 Update error message
REVERT: 1e25c88ae Fixed bug in added AWC input checks.
REVERT: bd4d7d5d9 Added checks for AWC inputs.
REVERT: cae3f1733 Updated AWC input parameters.
REVERT: 2947b4f10 Dylib -> so in Test_Cases
REVERT: e1379de0a Run ROSCO_testing from anywhere
REVERT: de8d228a6 Fix input file writing, force into int in write_array
REVERT: 5e75601ca Make AWC_n a list, too
REVERT: c1e4be785 Force AWC_n into int better
REVERT: 4194da43f Force AWC_n into int
REVERT: e4d7ec259 Tidy input writing, remove `future` references
REVERT: 74c7fcbfe Rename methods in readme
REVERT: 4e2a77833 Remove duplicate PF_Offsets input read
REVERT: ca7c44d8e Tidy print statements, file writing
REVERT: daf77e943 Merge remote-tracking branch 'ndev/rosco_awc_merge' into awc
REVERT: 8ea0a4c97 Merge remote-tracking branch 'jfred/AWC_NREL' into awc
REVERT: 87cde8c52 Merge remote-tracking branch 'upstream/develop' into awc
REVERT: 1ccc1b36b Platform control and Optional Inputs (#227)
REVERT: e8996003c Updated Coleman Transformation based AWC
REVERT: b2fdfbcf9 Update AWC_Mode descriptions
REVERT: b17f35005 Add 2.8 to update_discons, regenerate DISCON Should match closely to original DISCON
REVERT: 4604ebbee Add 20_awc to test_examples
REVERT: a9ec14e98 Update all DISCONs
REVERT: b24f07b6f Merge remote-tracking branch 'upstream/develop' into awc
REVERT: 70d5771c8 Fix file writing in AWC section
REVERT: 687b7603e Undo unintentional changes to wrie_registry.py
REVERT: 3bc2185ce Added NREL-developed AWC-implementation
REVERT: ff0ce39cf Update rosco_types.yaml
REVERT: 797e5544e Update utilities.py
REVERT: 826ca01fb Update toolbox_schema.yaml
REVERT: b141c4e04 Update 20_active_wake_control.py
REVERT: baaa8db06 Update ReadSetParameters.f90
REVERT: 5c878add4 Update ROSCO_Types.f90
REVERT: ae5090b5c Update Controllers.f90
REVERT: 32dc9fd8a Update NREL-2p8-127_DISCON.IN
REVERT: 46e7168d8 Update 20_active_wake_control.py
REVERT: 87b3f09c5 Revert setup directory
REVERT: de3a6fe44 Tidy up DISCON file writing
REVERT: de16ecdda Test all AWC cases in example 20
REVERT: cabbb2adc Merge pull request #1 from kbrown1snl/patch-1
REVERT: 1824f991a Fix units in schema
REVERT: f6d061f87 Update 20_active_wake_control.py
REVERT: a7d33035f Merge remote-tracking branch 'upstream/main' into develop
REVERT: 83022e586 Prep for more modes
REVERT: 3c40565ea Formatting fixes
REVERT: d93d44321 Update AWC example with instructions/theory
REVERT: 2bb01760d Tidy example
REVERT: 1693602fb Add AWC to toolbox schema
REVERT: 1201a6672 Update other DISCONs
REVERT: cc4080d03 Tidy up input additions
REVERT: da46fac31 Set min pitch for AWC
REVERT: 5c5333b12 Remove LocalVar%PC_MinPit = CntrPar%PC_MinPit, breaking setpoint smoother
REVERT: b102b34d2 Update example to point to correct inputs
REVERT: 80bd691ac Add AWC_Mode and move AWC into subroutine
REVERT: d05ef6c7a Merge branch 'develop' into rosco_awc_merge
REVERT: 2f941e38f Merge remote-tracking branch 'upstream/main' into develop
REVERT: a4717839d Add initial AWC example, needs OF3.4
REVERT: f5c3c1e5d Add case generation updates
REVERT: 42525a98a V270 prep (#218)
REVERT: a1cf97bbe Rename examples (#215)
REVERT: 20c9c9d1d Adding NREL 2.8 127 for AWC testing
REVERT: 0c0e466a8 Fixes to readsetparams and awc location
REVERT: 3155b63dd Add script for updating DISCON versions (#214)
REVERT: c51ed30ac Removed duplicate pitch assignment and removed MinPitch mods for AWC
REVERT: e554c1da0 IPC Saturation Fix [RAAW] (#210)
REVERT: be28641f1 Allow PA_Mode 1 (#213)
REVERT: 515da1797 Make AWC_complexangle a LocalVar for logging
REVERT: 974e271c7 Separate contribution to PitCom from mode calculation
REVERT: 0575d7527 Re-organize AWC pitch contribution, before actuator
REVERT: 1e802638f Apply DbKi to COMPLEX
REVERT: 0be88d47e Add AWC parameters to registry, regenerate types
REVERT: f5428de80 Merge remote-tracking branch 'upstream/develop' into rosco_awc_merge
REVERT: 721fbf5d1 Use new numpy
REVERT: 15c0603fb Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 05d7b3b94 Compatibility with Numpy v1.24 (#208)
REVERT: 75a648cdf AWC First Version, collected changes
REVERT: b3a8b1cbf Try compilers in macOS build
REVERT: b5c65bdb5 Add example_19 to CI
REVERT: c8d08c11d Fix default Twr_GainTau
REVERT: b1e122985 Allow Twr_Mode of 3 in tuning yaml
REVERT: 591571e76 Add Twr_GainFactor and Twr_GainTau
REVERT: 6881ac098 Add TRA example
REVERT: f7bae0009 Tidy input writer
REVERT: a3aa81fac Separate collective pitch command from total, use in SS
REVERT: b1f78e088 Add VS_RefSpd and PC_RefSpd to LocalVars
REVERT: f2db21273 Tidy up merge with develop
REVERT: a2741f20a Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 9d27a333b OpenFAST v3.3.0 (#202)
REVERT: 5ad1d4109 Doc fix (#200)
REVERT: 827b2814f Update sim.py (#196)
REVERT: 602332eac Various Bug Fixes (#188)
REVERT: 9384f0307 Added feature to read AeroDyn 14 files also for the case without tower influence. (#177)
REVERT: decd69470 Various Bug Fixes (#167)
REVERT: 2efac8480 Adding pitch actuator fault (#163)
REVERT: 34ca985ef Update discons
REVERT: b933b3bab Add rotor speed tracking, test case
REVERT: 86c8acfb2 Update Windows install instructions
REVERT: 778822b5d Add generator efficiency to power output of simple simulation
REVERT: ae7b26748 Update example 05 units
REVERT: 16bd05c66 Clean up TwrControl_Mode
REVERT: 2da1a16ab Change TD_Mode to Twr_Mode
REVERT: eec3d5f23 Merge branch 'develop' into f/exclusion_zone
REVERT: 772e36f96 update discons
REVERT: df919635b Update registry
REVERT: 9bc45ce27 Merge remote-tracking branch 'upstream/develop' into f/exclusion_zone
REVERT: 40a4edc9f F/zmq (#145)
REVERT: b45fb4300 External Control Interface (#141)
REVERT: 9ca75e1e2 Robust control updates (#139)
REVERT: 0bf504ee3 Pass through (#136)
REVERT: 75e7fb8dc RAAW Updates (#133)
REVERT: 50a2f90e3 Add OpenFAST channels that Simulink reads (#135)
REVERT: 5cdb0b5fb Pitch Actuator and IPC updates (#123)
REVERT: e035a7d95 Flip Ct and Cq table allocation (#130)
REVERT: bd0562cd4 sigma + ipc (#125)
REVERT: d52019231 Update docs to reflect CI process
REVERT: e9c9378e3 Merge remote-tracking branch 'upstream/develop' into develop
REVERT: 4126adbfd Bladed readthedocs (#117)
REVERT: d7d15b044 Update version in API change docs
REVERT: 8c312875c Bladed docs (#116)
REVERT: 5f18bf8c1 Increment version number
REVERT: 9b5499d76 ipc (#105)
REVERT: a857211fa Allow default inputs (#110)
REVERT: 1be503c03 Fix print var type for WE_CP
REVERT: 2d8a9451b Update DISCONs
REVERT: 7e30c4d64 Add exclusion zone to example
REVERT: eb9b901b8 Add exclusion zone mode to
REVERT: a5eb72c35 fix units for exclusion zone
REVERT: d50e23a00 Add twr frequency exclusion zone
REVERT: 38a13da46 add control packageg
REVERT: a9f43b948 Print when finished with ROSCO
REVERT: 58b4e1b5d Update discons - resolve conflict
REVERT: c8b23371f Merge remote-tracking branch 'upstream/develop' into f/ipc
REVERT: 480c7c4ad Disable logging level
REVERT: 3beca3eb9 Clean up, hone in on debug call
REVERT: 5692ab844 Add more debugging lines 2
REVERT: a568be6a5 Add more debugging lines
REVERT: e119569f4 Debug OL reading
REVERT: 0971f300c Set wind speed, rotor speed IC in example 14
REVERT: a362dc473 Fix OL_Input reading
REVERT: 41e0dc6e2 Fix ccrotor inputs (#104)
REVERT: b4c755844 Update DISCONs again
REVERT: db919993c Fix Material parameter path
REVERT: 1dc03765f shorten simulation time
REVERT: 5cb3725e3 Allow IPC to command pitch value below peak shaving saturation limit
REVERT: 07753d8ca Add IPC tuning vars
REVERT: 6caf61ed4 cleanup and streaamline run_examples
REVERT: 1e5398f9f add examples to readme
REVERT: 26bd784e9 Update cp surfaces and DISCONS
REVERT: 7f3d89a3d Add example 13 for IPC
REVERT: e35f20a13 expand pitch_initial to 30 degrees
REVERT: 7760bcd77 update coord reader/writer
REVERT: c1d7908dc Add IEA15MW_OL.yaml
REVERT: 9a75c7114 ignore dbg2 files
REVERT: 280996714 Update Polars to point to coord files
REVERT: b6ba25358 make sure IPC_KP is positive
REVERT: 03f2b761c fix ipc gain printing bug
REVERT: 9bc06254d fix variable names
REVERT: 02e08f7d0 add IPC gains to schema for pass-through ability
REVERT: 86f3a9c4c numerical qualifiers for error handling
REVERT: abd83d731 Add IPC_KP to api changes
REVERT: 844b0693d add CMakeFiles to gitignore
REVERT: 2ade01535 add mutichannel plotting with tuples
REVERT: 7e5e2a3d7 Error checking foro flp or ipc
REVERT: 79e5d5400 Addd IPC_KP to DISCON.IN
REVERT: 0111087a8 Fix comments in ColemanTransformInverse
REVERT: fded9d422 Add cyclic flap conrol
REVERT: dbd81afda Better logic for filtering RootMOOP and fix notch filter slopes bug
REVERT: 5e40ac40f Add IPC and filtered RootMyc to registry
REVERT: 823f5f00f Add proportional control and cleanup IPC
REVERT: 065befa76 Fix performance table paths
REVERT: afca92fce Update surface and DISCON.INs
REVERT: 262d3f6fe rename aerodynblade inputs
REVERT: ee00f6786 remove interpolation of blade chord and twist
REVERT: aad739652 Merge pull request #103 from nikhar-abbas/hf/robust
REVERT: 5d5a9ba82 add bld edgewise freq to robust dict_inputs
REVERT: 93dceb7ed Break up if statement in open loop pitch (#100)
REVERT: 6c1e4dbf1 Restart & registry (#99)
REVERT: 50f686dd2 Open Loop Control (#98)
REVERT: f57ee4553 Merge pull request #97 from nikhar-abbas/b/listcheck
REVERT: 6f16a9da6 update listcheck method for numpy arrays
REVERT: aa888a1fc FOCAL Updates (#64)

git-subtree-dir: ROSCO
git-subtree-split: b994e4de67c423ff598a4bb354657b62ff61a50d

* Clean up discons?

* Replace separate input descriptions with combined WEIS rsts

* Point to maintained ROSCO yamls

* Push actual rst file

* reg traj file to exmp 02 and init OF + tau1_const

* Add script to sync with WISDEM inputs

* improved code to handle initial conditions of openfast

* Point to monopile properly in 09

* Point example 10 to right geometry path

* Fix another geometry path

* Update subtree doc to new module development method

* Revise documentation

* fix bug in HD reader

* get rid of try except for reg traj openfast only

* update READMEs and remove bar usc from 08

* forgot the .py file

* push back bar_usc.yaml

* work on AD15 and SD optional inputs

* twr_freq not needed for FB

* write optional OF inputs only if defined

* Add note about ROSCO dll compilation

* Update documentation (#271)

* update docs and add notebooks

* remove R history

---------

Co-authored-by: dzalkind <dzalkind@nrel.gov>
Co-authored-by: pibo <ptrbortolotti@gmail.com>
Co-authored-by: dzalkind <65573423+dzalkind@users.noreply.github.com>
Co-authored-by: Pietro Bortolotti <pbortolo@kl2.head.cm.kestrel.hpc.nrel.gov>
Co-authored-by: Athul Krishna Sundarrajan <59715652+AthulKrishnaSundarrajan@users.noreply.github.com>
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@dzalkind @mayankchetan @johnjasa