Unable to install GDINA on Microsoft R 4.0.2 on Ubuntu 18.04 #6
Comments
rkmalaiya
changed the title
|
It seems that all errors are related to g++. Could you please check if you have g++ on your computer?
…Sent from my phone
________________________________
From: Ritesh Kumar Malaiya <notifications@github.com>
Sent: Sunday, January 3, 2021 7:45:25 AM
To: Wenchao-Ma/GDINA <GDINA@noreply.github.com>
Cc: Subscribed <subscribed@noreply.github.com>
Subject: [EXTERNAL] [Wenchao-Ma/GDINA] Unable to install GDINA on MRAN 4.0.2 on Ubuntu 18.04 (#6)
I am trying to install GDINA on MRAN 4.0.2 on Ubuntu 18.04 server and I am getting below error. Please advise how may I do the installation.
Microsoft R Open 4.0.2
The enhanced R distribution from Microsoft
Microsoft packages Copyright (C) 2020 Microsoft Corporation
Using the Intel MKL for parallel mathematical computing (using 1 cores).
Default CRAN mirror snapshot taken on 2020-07-16.
See: https://mran.microsoft.com/.
* installing *source* package ‘GDINA’ ...
** package ‘GDINA’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
.
.
. _<removing some g++ compilation outputs>_
g++ -shared -L/opt/microsoft/ropen/4.0.2/lib64/R/lib -o GDINA.so Lik.o Lik2.o LouisC.o Mord.o Mstep.o NgRg.o RcppExports.o SE.o aggregateCol.o fitstats.o scorep.o sequP.o util.o varsigma.o Microsoft R Open 4.0.2 The enhanced R distribution from Microsoft Microsoft packages Copyright (C) 2020 Microsoft Corporation Using the Intel MKL for parallel mathematical computing (using 1 cores). Default CRAN mirror snapshot taken on 2020-07-16. See: https://mran.microsoft.com/. -L/opt/microsoft/ropen/4.0.2/lib64/R/lib -lRlapack -L/opt/microsoft/ropen/4.0.2/lib64/R/lib -lRblas -lgfortran -lm -L/opt/microsoft/ropen/4.0.2/lib64/R/lib -lR
g++: error: Microsoft: No such file or directory
g++: error: R: No such file or directory
g++: error: Open: No such file or directory
g++: error: 4.0.2: No such file or directory
g++: error: The: No such file or directory
g++: error: enhanced: No such file or directory
g++: error: R: No such file or directory
g++: error: distribution: No such file or directory
g++: error: from: No such file or directory
g++: error: Microsoft: No such file or directory
g++: error: Microsoft: No such file or directory
g++: error: packages: No such file or directory
g++: error: Copyright: No such file or directory
g++: error: (C): No such file or directory
g++: error: 2020: No such file or directory
g++: error: Microsoft: No such file or directory
g++: error: Corporation: No such file or directory
g++: error: Using: No such file or directory
g++: error: the: No such file or directory
g++: error: Intel: No such file or directory
g++: error: MKL: No such file or directory
g++: error: for: No such file or directory
g++: error: parallel: No such file or directory
g++: error: mathematical: No such file or directory
g++: error: computing: No such file or directory
g++: error: (using: No such file or directory
g++: error: 1: No such file or directory
g++: error: cores).: No such file or directory
g++: error: Default: No such file or directory
g++: error: CRAN: No such file or directory
g++: error: mirror: No such file or directory
g++: error: snapshot: No such file or directory
g++: error: taken: No such file or directory
g++: error: on: No such file or directory
g++: error: 2020-07-16.: No such file or directory
g++: error: See:: No such file or directory
g++: error: https://mran.microsoft.com/.: No such file or directory
/opt/microsoft/ropen/4.0.2/lib64/R/share/make/shlib.mk:6: recipe for target 'GDINA.so' failed
make: *** [GDINA.so] Error 1
ERROR: compilation failed for package ‘GDINA’
* removing ‘/home/rstudio/R/x86_64-pc-linux-gnu-library/4.0/GDINA’
Warning in install.packages :
installation of package ‘GDINA’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpTrbkOd/downloaded_packages’
—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FWenchao-Ma%2FGDINA%2Fissues%2F6&data=04%7C01%7Cwenchao.ma%40ua.edu%7Ca04137a2f10d4b60ee3408d8afedd39c%7C2a00728ef0d040b4a4e8ce433f3fbca7%7C0%7C0%7C637452783280536017%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=ruogHPD6vlmOhTRv5%2BLi4qoTxESIcvJlMG%2B9UECy%2F8k%3D&reserved=0>, or unsubscribe<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FAC5XE3YDPSFTFBWGDWXX7HTSYBYHLANCNFSM4VR4G4VA&data=04%7C01%7Cwenchao.ma%40ua.edu%7Ca04137a2f10d4b60ee3408d8afedd39c%7C2a00728ef0d040b4a4e8ce433f3fbca7%7C0%7C0%7C637452783280536017%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=MJRwVvZHaCVC%2BcLLBfP%2FbLto5O9n4Uf3Hv2Hu7My%2Bjw%3D&reserved=0>.
|
|
Thanks for the response. I am able to install tidyverse on the same computer. It also compiled the code using g++ while installing. To check whether there is some issue with my g++, I create another conda environment and installed R 4.0.3 on the same computer. On this R, I am able to install GDINA successfully. I am not sure why I am able to install tidyverse (and other packages like tidytext) on MRAN 4.0.2 but not GDINA. I am having similar issue with CDM package too (not sure if this info will help)!! |
|
Sorry, I don't have Ubuntu to test this. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
I am trying to install GDINA on MRAN 4.0.2 on Ubuntu 18.04 server and I am getting below error. Please advise how may I do the installation.
The text was updated successfully, but these errors were encountered: