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I think popovers should show up over admin submenus.
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I don't think so - the notice is part of the Gutenberg UI, not something that should block you from using other wp-admin functions.
The design of traditional WP notices is very different (inline with the page, rather than popovers) but they don't suffer from this issue.
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I agree about the notices, I was talking about the popovers (They can be full width and have a grayed background to cover the rest of the page)
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I would call this a modal. The gray background should prohibit expanding the admin menus in this case.
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What if you open the inserter (which is a popover on a small screen), Should the inserter show up above or under the admin bar? I think it should be above