PACO：Learning Causal Biological Networks with Parallel Ant Colony Optimization Algorithm

jdk1.8

run： java -jar PACO.jar

input： for (int i = 1; i <= dataSetSize; i++) { dataSet.add("F:\dataset\data\sim2\sim2_sub" + i + ".txt"); }

Default Input：

Parmeter1: "F:\dataset\data\sim2\sim2_sub(1-50).txt"; 50 sub-datasets of length 200; File path of simulation-data which has been Discretized. Parmeter2: 10 ; Number of biosignaling node Parmeter3: 200; Length of a sub-data Parmeter4: 10 ; Running times

Default parameters of PACO algorithm: α = 1.2, β = 2, ρ = 0.35, q0 = 0.75 NC = 10, Num = 20

Note: Data are seperated by comma. Refer to the sample data given.