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Zienhleh/README.md

  • 👋 Hi, I’m @Zienhleh :

  • 👀 I’m interested in Terpene Synthase genes in Ascomycota

  • 🌱 I’m currently learning Phylogenomics and terpene synthase genes identified in fungi

  • 📫 How to reach me: zinhle.nxumalo@fabi.up.ac.za

My name is Zinhle Nxumalo This is directory that contain all my scripts and data sets that I have used to conduct a study to identify terpene synthase genes in Ascomycota

#Parent directory: MSc_Project_ZAN

#Subdirectories: Ascomycota and PracticePhylogenetics

Ascomycota: Asc_TPS_genes New_Sequence New_Sequence_backup Scripts Selected_full_sequences_withbuscoresults

Asc_TPS_genes #This directory contains terpene synthase genes. this is the directory that was used to conduct and create terpene synthase gene tree.

New_Sequence

This directory contains sequences that are use to create species tree

Subdirectories:

       ALIGNED_FASTA_SEQUENCES

#contain aligned fasta files with subdir that has trimmed sequences

       ALIGNED_SEQ_PHY

#Contains aligned Phylip sequences with a subdir that has trimmed sequences of that format

       BUSCO_RESULTS

#This subdir contains the buso full report results with which are used to create the species tree.

       TESTING_DIR

#A directory to test scripts in.

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