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HWE accounting for population structure

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@Zilong-Li Zilong-Li released this 16 Oct 13:54
· 1 commit to main since this release
  • HWE test accounting for population structure via --inbreed 1
  • new option --USV as the prefix of pcaone .eigvecs/.eigvals/.loadigns/.mbim files
  • the output .eigvecs2 stores the eigenvectors of the covariance matrix, which also works for BEALGE file with genotype likelihood input, while the .eigvecs,.eigvals,.loadings stores the U,S,V matrix for reconstructing the PI matrix

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