- To obtain 6-Fold Cross-Validation results, please run:
- 'CKSAAP_PhoglySite_Method' for CKSAAP_PhoglySite result
- 'iPGK_PseAAC_Method' for iPGK-PseAAC result
- 'BigramPGK_Method' for Bigram-PGK result
- 'RAM_PGK_Method' for RAM-PGK result (Feature Selected via backward elimination)
- 'RAM_PGK_Method_NoFeatureSelection' for RAM-PGK (without feature selection) result
The above scripts calculate the 6-fold cross-validation on the same datasets. This is found in the file named 'ModelData'.
- To obtain feature construction of the methods, please run:
- 'CKSAAP_Preprocessing' for CKSAAP_PhoglySite features
- 'iPGK_PseAAC_Preprocessing' for iPGK-PseAAC features
- 'BigramPGK_Preprocessing' for Bigram-PGK features
- 'RAM_PGK_Preprocessing' for RAM-PGK features
'Phosphoglycerylationstruct' file contains the protein sequences with true labels used in this work.
'libsvm-weights-3.22' is the LibSVM package used in this work.