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We've successfully run through the tutorial with our dataset and were able to detect interesting regulons. In our system, we would greatly benefit from examining the motif weight/probability matrices (in addition to their IDs or logos), as we would like to quantify CpG presence in those motifs.
We see in the RcisTarget folder structure that the "raw" database (used to generate the logos) is currently unavailable, would you please provide it for any of the working versions, particularly v8?
Thanks a lot!
The text was updated successfully, but these errors were encountered:
Hello, thank you for your fantastic work on SCENIC.
I would also like to have access to the position weight matrices of the motifs corresponding to the version of the ranking file "hg19-tss-centered-10kb-7species.mc9nr.feather". The only PWMs available corresponds to the V10, with only few motifs overlapping with the precedent versions.
Would it be possible to have access to these files ?
Thanks a lot !
Hello,
We've successfully run through the tutorial with our dataset and were able to detect interesting regulons. In our system, we would greatly benefit from examining the motif weight/probability matrices (in addition to their IDs or logos), as we would like to quantify CpG presence in those motifs.
We see in the RcisTarget folder structure that the "raw" database (used to generate the logos) is currently unavailable, would you please provide it for any of the working versions, particularly v8?
Thanks a lot!
The text was updated successfully, but these errors were encountered: