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Filter records from input genomes #107

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sebschmi opened this issue Aug 26, 2020 · 1 comment
Closed
3 tasks done

Filter records from input genomes #107

sebschmi opened this issue Aug 26, 2020 · 1 comment
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enhancement New feature or request
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Milestone A pipeline

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sebschmi commented Aug 26, 2020 •
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Some input genomes have multiple records, of which only one is correct. We should filter all others out in our pipeline.

  • implement as command filter-records
  • parameter --retain for the id of the record that should be retained
  • integrate into the pipeline
@sebschmi sebschmi added the enhancement New feature or request label Aug 26, 2020
@sebschmi sebschmi added this to the Milestone A pipeline milestone Aug 26, 2020
@sebschmi sebschmi mentioned this issue Aug 27, 2020
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sebschmi commented Aug 28, 2020 •
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Do together with #96

@sebschmi sebschmi self-assigned this Sep 8, 2020
sebschmi added a commit that referenced this issue Sep 8, 2020
@sebschmi
Implement filter command with retain option.
4d5cb4f 
The filter command either outputs the genome as input, or if `--retain <id>` is given, it outputs only the record with the given id.

Relates to #107
sebschmi added a commit that referenced this issue Sep 8, 2020
@sebschmi
Integrate filter command into pipeline.
7f70881 
Relates to #107
sebschmi added a commit that referenced this issue Sep 8, 2020
@sebschmi
Integrate filter command into pipeline.
7df6d81 
Relates to #107
@sebschmi sebschmi closed this as completed Sep 8, 2020
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