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Fix calculation of p_pos in calcuate_enrichment_stats #257

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Oct 2, 2020
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Fix calculation of p_pos in calcuate_enrichment_stats #257

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2 changes: 1 addition & 1 deletion ark/utils/spatial_analysis_utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -307,7 +307,7 @@ def calculate_enrichment_stats(close_num, close_num_rand):
# Calculate z score based on distribution
z[j, k] = (close_num[j, k] - muhat[j, k]) / sigmahat[j, k]
# Calculate both positive and negative enrichment p values
p_pos[j, k] = (1 + (np.sum(tmp >= close_num[j, k]))) / (bootstrap_num + 1)
p_pos[j, k] = (1 + (np.sum(tmp > close_num[j, k]))) / (bootstrap_num + 1)
p_neg[j, k] = (1 + (np.sum(tmp < close_num[j, k]))) / (bootstrap_num + 1)

# Get fdh_br adjusted p values
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