In this repo, I will be creating scripts for RNA-Seq analysis. The scripts provided will be able to run using slurm and nextflow.
To download the scripts meant for slurm only, type the following command in your command line interface (HTC/PSC for Pitt users).
# first check the files available for download
svn ls https://github.com/anishbhaswanth/rnaseq/trunk/src/slurm/
# then download the files using the following command
svn checkout https://github.com/anishbhaswanth/rnaseq/trunk/src/slurm/
Note that, the original path https://github.com/anishbhaswanth/rnaseq/tree/main/src/slurm has been replaced by https://github.com/anishbhaswanth/rnaseq/trunk/src/slurm/.