MCPhylo

This package offers the functionality for phylogenetic computations in Julia. It is an extension of the Mamba package which implements different variants of Markov Chain Monte Carlo (MCMC) sampling for Bayesian analysis. (https://mambajl.readthedocs.io/en/latest/) MCPhylo extends Mamba to perform phylogenetic computations.

This module is build on a forked instance of Mamba 0.12.0

The documentation can be found here.

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Citation

If you use this software in an academic publication please cite the following paper No-U-Turn sampling for phylogenetic trees, Wahle (2021). (bioRxiv Paper)

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General Information

This package can be installed via the official Julia PackageManager.

using Pkg
Pkg.add("MCPhylo")

The latest functionalities can be obtained by installing the it directly from the GitHub source.

using Pkg
Pkg.add("https://github.com/erathorn/MCPhylo.jl")