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Add workflow rules for running G123 and IHS GWSS #33

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alimanfoo opened this issue May 12, 2023 · 1 comment
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Add workflow rules for running G123 and IHS GWSS #33

alimanfoo opened this issue May 12, 2023 · 1 comment
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@sanjaynagi
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alpha1

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@alimanfoo
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Currently for H12 we have a dedicated notebook and a task in the workflow to run the GWSS for all contigs and cohorts.

However, we don't have equivalent tasks for G123 or IHS.

Later, when building the cohort pages, IHS and G123 scans get run because they are requested when building the plots. This is OK, but it might be nice to have dedicated tasks so we can see when those scans are actually being run during a snakemake build.
@sanjaynagi sanjaynagi changed the title Add workflow tasks for running G123 and IHS GWSS Add workflow rules for running G123 and IHS GWSS May 15, 2023
@sanjaynagi sanjaynagi self-assigned this May 31, 2023
@sanjaynagi sanjaynagi mentioned this issue May 31, 2023
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@alimanfoo alimanfoo added this to the alpha1 milestone May 31, 2023
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Closed with #44

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