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Hello there :)

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@DVios @pocketdrive @metagentools

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anuradhawick/README.md

G'day! Welcome to my GitHub home πŸ‘‹

I’m Anuradhaβ€”I’m and Solutions Architect for Bioinformatics Products at CSIRO, Australia. I got my Ph.D. in computer science from the School of Computing at the Australian National University in Canberra, Australia. I enjoy writing code, playing games and IoT DIYs.

Check out my personal website anuradhawick.com.

Check my recent web-site development at Vinyl.LK. This is implemented in AWS with Lambda, S3, Cloudfront and Route53! Check repo in Github

  • πŸ”­ I build bioinformatics software/tools, browse through my repos
  • πŸ”­ I've worked on clustering TGS sequencing data (binning long reads)
  • 🌱 Interested areas include Machine Learning, Bioinformatics and Computational Biology
  • πŸ“« How to reach me: hello@anuradhawick.com
  • 🏠 Check out my portfolio website: https://anuradhawick.com
  • πŸ“ Check out my Medium Blog: https://medium.com/@anuradhawick

My Apps my website

πŸ’» TypeFaster

A platform to practice your typiing. Find the repo - https://github.com/anuradhawick/typefaster .You can access the demo on https://typefaster.anuradhawick.com

πŸ“Ž Clipper

A versatile clipboard management and note-taking application designed specifically for developers.

AI/ML/Bioinformatics Researcher tools

I feel quite thrilled about few of my recent work! So decided to showcase here. 😎

🧬 Kmertools

kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics.

🧬 RsBio-Seq

A faster FASTA/FASTQ reader with very small footprint in your code compared to Biopython.

First long read binner that uses both coverage and composition both in metagenomics binning. Here we introduce a neat trick to estimate read coverage via kmers and build a feature vector for coverage.

This enables generation of training images for YOLO given a set of objects and backgrounds. Makes life a lot easier as manually annotating real images is labour intensive.

This came as a requirement in Vinyl.LK. This is a solid template for any AWS lambda based project. All the yaml files and templates are included with sufficient(I hope) help and documentation.

πŸ‘¨πŸ½β€πŸ’» Algorithm Competitions

Here you will find how I have done some of the challenging code events in the past few years. I will try to migrate the things I have done before my time in GitHub as we go along.

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  1. kmertools kmertools Public

    kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

    Rust 29 2

  2. algo-competitions algo-competitions Public

    Place to have all the algo stuff I do

    Python 1

  3. GPU-Optimized-Biological-Data-Analysis GPU-Optimized-Biological-Data-Analysis Public

    Java 1 1

  4. pocketdrive/pocketdrive-server pocketdrive/pocketdrive-server Public

    JavaScript

  5. vinyl-search vinyl-search Public

    All about Sri Lankan vintage and modern music records

    CSS 1

  6. aehrc/terraform-aws-serverless-beacon aehrc/terraform-aws-serverless-beacon Public

    Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic information

    Python 9 5