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[MINOR] Addressed Docs dependency security vulnerability followup #82

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Followup to 26428c5

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@jerryshao I'm not sure why security want us to update to the latest version when the vulnerability was fixed 3 major versions earlier, but I updated the nokogiri dependency to use the latest version.

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I also don't have the context about this issue. Let's follow what security asked.

@asfgit asfgit closed this in 6d2ffdd Mar 7, 2018
asfgit pushed a commit that referenced this pull request Mar 7, 2018
Followup to 26428c5

Author: Alex Bozarth <ajbozart@us.ibm.com>

Closes #82 from ajbozarth/gem.

(cherry picked from commit 6d2ffdd)
Signed-off-by: Alex Bozarth <ajbozart@us.ibm.com>
asfgit pushed a commit that referenced this pull request Mar 7, 2018
Followup to 26428c5

Author: Alex Bozarth <ajbozart@us.ibm.com>

Closes #82 from ajbozarth/gem.

(cherry picked from commit 6d2ffdd)
Signed-off-by: Alex Bozarth <ajbozart@us.ibm.com>
@ajbozarth ajbozarth deleted the gem branch March 7, 2018 20:31
tkakantousis pushed a commit to tkakantousis/incubator-livy that referenced this pull request Oct 23, 2018
Followup to 26428c5

Author: Alex Bozarth <ajbozart@us.ibm.com>

Closes apache#82 from ajbozarth/gem.

(cherry picked from commit 6d2ffdd)
Signed-off-by: Alex Bozarth <ajbozart@us.ibm.com>
tkakantousis added a commit to logicalclocks/incubator-livy that referenced this pull request Oct 24, 2018
* [MINOR] Addressed Docs dependency security vulnerability followup

Followup to 26428c5

Author: Alex Bozarth <ajbozart@us.ibm.com>

Closes apache#82 from ajbozarth/gem.

(cherry picked from commit 6d2ffdd)
Signed-off-by: Alex Bozarth <ajbozart@us.ibm.com>

* [MINOR] Fix travis builds

Each individual commit has a more detailed description of what's being changed and why.

At the moment, Travis builds don't work:

* https://travis-ci.org/mineo/incubator-livy/builds/359324523 - the `sudo pip3 install --upgrade pip "setuptools < 36"` command fails with `sudo: pip3: command not found`.
* fixing that, the `failing the org.apache.rat:apache-rat-plugin:0.12:check` maven goal fails because it sees `.pytest_cache` folders that it doesn't know about (pytest-dev/pytest#3286, failure in https://travis-ci.org/mineo/incubator-livy/jobs/359326261, check the raw log).

This pull request works around the pip3 failures by just using pip as a callable module (possible since Python 3.4) and adding `.pytest_cache` to raw-excludes, as well as showing the contents of `rat.txt` files in the `after_failure` step. I concede that the pip change is more of a workaround, but I don't know how else to fix it and unblock testing.

Running the tests on travis.

Please review https://livy.incubator.apache.org/community/ before opening a pull request.

Author: Wieland Hoffmann <WHoffman@de.ibm.com>

Closes apache#84 from mineo/rat.

(cherry picked from commit 06cfa7b)
Signed-off-by: jerryshao <sshao@hortonworks.com>

* [LIVY-455][REPL] Fix json4s doesn't support java.math.BigDecimal issue

## What changes were proposed in this pull request?

Livy's SQLInterpreter will throw exception when rows contain java.math.BigDecimal data. This is because current version of json4s doesn't treat java.math.BigDecimal type as primitive type. On the contrary, json4s supports Scala BigDecimal as primitive type. So the fix is to convert java BigDecimal to Scala BigDecimal.

## How was this patch tested?

Unit test is added.

Author: jerryshao <sshao@hortonworks.com>

Closes apache#85 from jerryshao/LIVY-455.

(cherry picked from commit 7e4bb3b)
Signed-off-by: jerryshao <sshao@hortonworks.com>

* [LIVY-457][REPL] Fix SQLContext is not initialized correctly issue

## What changes were proposed in this pull request?

The signature of SQLContext's constructor is changed in Spark2, but we're still using the Spark1's signature, which will throw an exception when using this object.

## How was this patch tested?

UT and local verification.

Author: jerryshao <sshao@hortonworks.com>

Closes apache#86 from jerryshao/LIVY-457.

(cherry picked from commit cd8b112)
Signed-off-by: jerryshao <sshao@hortonworks.com>

* [LIVY-466][RSC] Fix RSCDriver exception during RPC shutdown

## What changes were proposed in this pull request?

During RSCDriver's shutdown, it will first shutdown RPC server, and then all the RPC clients. When RPC client is closed, it will register a timeout to avoid orphaned RSCDriver, but this is not necessary during RSCDriver's shutdown, so here fixing this issue. The details can be seen in [JIRA](https://issues.apache.org/jira/browse/LIVY-466).

## How was this patch tested?

Local verification.

Author: jerryshao <sshao@hortonworks.com>

Closes apache#90 from jerryshao/LIVY-466.

(cherry picked from commit e3f45a0)
Signed-off-by: jerryshao <sshao@hortonworks.com>

* [LIVY-472][SERVER] Improve the logs for fail-to-create session

## What changes were proposed in this pull request?

Livy currently doesn't give a very clear log about the fail-to-create session, it only says that session related app tag cannot be found in RM, but doesn't tell user how to search and get the true root cause. So here change the logs to make it more clear.

## How was this patch tested?

Local verification.

Author: jerryshao <sshao@hortonworks.com>

Closes apache#96 from jerryshao/LIVY-472.

(cherry picked from commit ca4cad2)
Signed-off-by: jerryshao <sshao@hortonworks.com>

* [Security] Update to support pyspark and sparkr changes in Spark 2.3.1

* [LIVY-498][REPL] Fix Windows CRLF line ending issue in SparkR interpreter

## What changes were proposed in this pull request?

If the issued query contains CRLF EOL, it will be failed to execute on *nix machine. This happens when submitting queries from Windows machine and executing on Linux machine.

So here propose to convert statement to match system's EOL.

## How was this patch tested?

New UT added.

Author: jerryshao <sshao@hortonworks.com>

Closes apache#105 from jerryshao/LIVY-498.

(cherry picked from commit 8027ca7)
Signed-off-by: jerryshao <sshao@hortonworks.com>

* upgrade to work with spark 2.3.2
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