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For general english text, indexing the stop words can easily lead to explosion in the size of text index and consequently impact the performance of queries. For now use a predefined list of general stop words that can be passed to the text analyzer both during indexing and querying. The analyzer ensures that stop words in input text are pruned and not indexed. Similarly, on the query path, if stop words are present in search expression, the matching is done without stop words.
This is something that can possibly be specified on a per use case (per text index basis). Currently we have a hardcoded list of common english stop words.