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18 Open 11 Closed
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Issues list

Cleanup temporary files enhancement New feature or request
#111 opened Nov 9, 2021 by apetkau
Fix incorrect unknown amino-acid level HGVS features bug Something isn't working variant/mutation Variant/mutation based analysis
#102 opened Aug 26, 2021 by apetkau
Fix restoring original MLST sample names bug Something isn't working mlst MLST analysis
#98 opened Aug 21, 2021 by apetkau
More tests for building tree enhancement New feature or request variant/mutation Variant/mutation based analysis
#94 opened Aug 18, 2021 by apetkau
Use existing reference sequence databases (seqrepo and snpeff) enhancement New feature or request variant/mutation Variant/mutation based analysis
#90 opened Aug 11, 2021 by apetkau
Look into different representation of sets of identifiers in database data model The internal data model of the application.
#82 opened Jul 29, 2021 by apetkau
Add prefix to internal database ids data model The internal data model of the application.
#81 opened Jul 29, 2021 by apetkau
Add tests for finding unknown sample sets by hgvs id variant/mutation Variant/mutation based analysis
#77 opened Jul 28, 2021 by apetkau
Additional tests for mutations with same names variant/mutation Variant/mutation based analysis
#76 opened Jul 28, 2021 by apetkau
Implement a SequenceTyper enhancement New feature or request kmer Kmer based analysis mlst MLST analysis variant/mutation Variant/mutation based analysis
#75 opened Jul 27, 2021 by apetkau
Implement query language in command-line interface enhancement New feature or request
#74 opened Jul 27, 2021 by apetkau
2
Combine together SNVs into MNVs for assemblies variant/mutation Variant/mutation based analysis
#71 opened Jul 24, 2021 by apetkau
Add better support for MLST enhancement New feature or request mlst MLST analysis
#65 opened Jul 22, 2021 by apetkau
Missing/unknown and regular variants overlap bug Something isn't working variant/mutation Variant/mutation based analysis
#63 opened Jul 16, 2021 by apetkau
Add instructions for developing on Windows documentation Improvements or additions to documentation
#57 opened Jun 9, 2021 by apetkau
1
Using conda environments for indexing assemblies is very slow
#53 opened Jun 6, 2021 by apetkau
Look more into how sourmash handles sequences with ambiguous (N) characters kmer Kmer based analysis
#39 opened May 6, 2021 by apetkau
2
Improve implementation of database path relative translations enhancement New feature or request
#28 opened Apr 26, 2021 by apetkau
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