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1. kussell-lab/viral-mcorr kussell-lab/viral-mcorr Public

   Using correlated substitutions to infer recombination rates in RNA viruses

   Go 17 1

2. kussell-lab/virus_alignment_example kussell-lab/virus_alignment_example Public

   Example workflow for aligning viral genomes for use with viral-mcorr using sars-like coronaviruses

   Python

3. kussell-lab/viral-mcorr_sl-cov_examples kussell-lab/viral-mcorr_sl-cov_examples Public

   Example workflows for using viral-mcorr to infer recombination rates for RNA viruses

   HTML

4. kussell-lab/mcorr kussell-lab/mcorr Public

   Inferring bacterial recombination rates from large-scale sequencing datasets.

   Go 41 8

5. kussell-lab/ReferenceAlignmentGenerator kussell-lab/ReferenceAlignmentGenerator Public

   Mapping reads to the reference genome to construct consensus genomes and generate alignments

   Go 2 1

6. kussell-lab/mcorr-clustering kussell-lab/mcorr-clustering Public

   Hierarchical clustering using mcorr

   Go