inputting bam file - 'one.filt.intra.loop_counts.bedpe' does not exist in current working directory

[armenabnousi]

hi, is the --input-bam parameter supported now? It's not in the documentation online but shows in the hichipper help. When I tried running it says
"Not fully supported yet! Processing: one" followed by an error "one.filt.intra.loop_counts.bedpe' does not exist in current working directory".
Is this because the option for bam input is not supported yet or it's from my run. Thanks!

[caleblareau]

Hey Armen, Still in progress but will update you when it’s completed… hopefully soon.

…

On Jul 5, 2018, at 10:59 AM, Armen Abnousi ***@***.***> wrote: hi, is the --input-bam parameter supported now? It's not in the documentation online but shows in the hichipper help. When I tried running it says "Not fully supported yet! Processing: one" followed by an error "one.filt.intra.loop_counts.bedpe' does not exist in current working directory". Is this because the option for bam input is not supported yet or it's from my run. Thanks! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#48>, or mute the thread <https://github.com/notifications/unsubscribe-auth/APei4fRYrZz5wcw40kDsE6O4uMY-yTavks5uDinrgaJpZM4VEDAW>.