Cluster adjustments and minor bug fixes and param changes #1
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added 7 commits
February 11, 2017 13:07
Changed piping of samtools and bwa aln for compatibility of the clusters new version.
Merging all Asaf changes with the piping bug fixed, bwa param change in map_chimerci_fragments.py and bug fix for considering the bwa_params given Conflicts: RILseq/__init__.py
The fix extract the chromosome length as described in fsa_lens according to the value reported in gpos[0] (the gene chromosome name) and calculates the position modulus the chromosome length.
and "RNA1 to" to " Start of RNA1 last read". The same for RNA2
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Jul 20, 2022
Fixed the concordance function to compute cyclic distance instead of …
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