use appropriate genome build for array data also

atgu · Apr 1, 2024 · 96f2e75 · 96f2e75
1 parent 1dbe727
commit 96f2e75
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/gwaspy/phasing/shapeit5_phase.py b/gwaspy/phasing/shapeit5_phase.py
@@ -300,6 +300,7 @@ def concatenate_rare_chunks(
                 b=batch,
                 vcf=chrom_vcf,
                 ref_vf=ref_vcf,
+                reference=genome_build,
                 maf=0.0,
                 pedigree=fam_file,
                 region=chromosome,