Placeholder PR from Valley Health

.gitignore

@@ -339,3 +339,4 @@ $RECYCLE.BIN/
 *.lnk
 
 # End of https://www.toptal.com/developers/gitignore/api/node,python,macos,windows,git
+Install.sh

.pre-commit-config.yaml

@@ -21,7 +21,7 @@ exclude: >
 
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.4.0
+  rev: v4.6.0
   hooks:
   - id: pretty-format-json
     args: [--autofix]
@@ -30,26 +30,22 @@ repos:
   - id: check-yaml
   - id: end-of-file-fixer
 - repo: https://github.com/PyCQA/isort
-  rev: 5.12.0
+  rev: 5.13.2
   hooks:
   - id: isort
     exclude: migrations* | docs*
     additional_dependencies: [toml]
 - repo: https://github.com/psf/black
-  rev: 23.9.1
+  rev: 24.8.0
   hooks:
   - id: black
-    language_version: python3.9
+    language_version: python3.11
 - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
-  rev: v2.10.0
+  rev: v2.14.0
   hooks:
   - id: pretty-format-toml
     args: [--autofix]
   - id: pretty-format-ini
     args: [--autofix]
   - id: pretty-format-yaml
     args: [--autofix, --indent, '2']
-- repo: https://github.com/Riverside-Healthcare/djLint
-  rev: v1.33.0
-  hooks:
-  - id: djlint-jinja

.version

@@ -1 +1 @@
-2.12.3
+3.0.0

babel.config.js

@@ -1,5 +1,5 @@
-module.exports = function (api) {
-  api.cache(true);
+export default function (api) {
+  api.cache(false);
   const presets = [['@babel/preset-env']];
   const plugins = [];
   return {

config.py

@@ -14,6 +14,7 @@
     """All prod configuration set here. For dev there are overrides below."""
 
     # pylint: disable=too-few-public-methods
+    # ruff: noqa: RUF012
 
     ALLOWED_HOSTS = ["*", "localhost"]
 
@@ -244,7 +245,7 @@
     """
 
     DEVOPS_URL = "https://dev.azure.com/orgname/"
-    DEVOPS_TOKEN = r"token"
+    DEVOPS_TOKEN = r"token"  # noqa: S105
 
     """
         Default SQL Connection Settings
@@ -324,6 +325,8 @@
 
 
 class DemoConfig(Config):
+    """Configuration for a demo."""
+
     DEBUG = False
     DEMO = True
     AUTH_METHOD = "DEV"
@@ -348,7 +351,7 @@
     # pylint: disable=too-few-public-methods
     SQLALCHEMY_DATABASE_URI = os.environ.get(
         "DATABASE_URL",
-        "postgresql+psycopg2://postgres@localhost/atlas_hub_scrap_test"
+        "postgresql+psycopg2://postgres@localhost/atlas_hub_scrap_test",
         # "sqlite:///../test.sqlite",
     ).replace("postgres://", "postgresql://")
 
@@ -371,9 +374,9 @@
 
     # docker run -p 22:22 -d emberstack/sftp --name sftp
     SFTP_SERVER_USER = "demo"
-    SFTP_SERVER_PASS = "demo"
+    SFTP_SERVER_PASS = "demo"  # noqa: S105
 
     # docker run -d --name ftpd_server -p 21:21  onekilo79/ftpd_test
     # docker run -d --name ftpd_server -p 21:21 -p 30000-30009:30000-30009 -e FTP_USER_NAME=demo -e FTP_USER_PASS=demo -e FTP_USER_HOME=/home/demo -e "PUBLICHOST=localhost" -e "ADDED_FLAGS=-d -d" stilliard/pure-ftpd
     FTP_SERVER_USER = "demo"
-    FTP_SERVER_PASS = "demo"
+    FTP_SERVER_PASS = "demo"  # noqa: S105

eslint.config.mjs

@@ -0,0 +1,39 @@
+import globals from "globals";
+import path from "node:path";
+import { fileURLToPath } from "node:url";
+import js from "@eslint/js";
+import { FlatCompat } from "@eslint/eslintrc";
+
+const __filename = fileURLToPath(import.meta.url);
+const __dirname = path.dirname(__filename);
+const compat = new FlatCompat({
+    baseDirectory: __dirname,
+    recommendedConfig: js.configs.recommended,
+    allConfig: js.configs.all
+});
+
+export default [{
+    ignores: [
+        "web/static/**/*.min.*",
+        "node_modules/*",
+        "**/.mypy_cache",
+        "**/.pytest_cache",
+        "**/.tox",
+        "web/static/lib/*",
+        "web/static/fonts/*",
+        "web/static/css/*",
+    ],
+}, ...compat.extends("eslint:recommended"), {
+    languageOptions: {
+        globals: {
+            ...globals.browser,
+            CodeMirror: "readonly",
+            flatpickr: "readonly",
+        },
+
+        ecmaVersion: 12,
+        sourceType: "script",
+    },
+
+    rules: {},
+}];

gulpfile.mjs

@@ -1,56 +1,100 @@
-import gulp from 'gulp';
+import pkg from 'gulp';
+const { src, dest, task, parallel,series } = pkg;
 import autoprefexer from 'gulp-autoprefixer';
 import * as dartSass from 'sass';
 import gulpSass from 'gulp-sass';
 const sass = gulpSass(dartSass);
-
+import postcss from 'gulp-postcss';
 import replace from 'gulp-replace';
-import fontawesomeSubset from 'fontawesome-subset';
+import {fontawesomeSubset} from 'fontawesome-subset';
 import {deleteSync} from 'del';
 import purgecss from 'gulp-purgecss';
-import cssnano from 'gulp-cssnano';
+import cssnano from 'cssnano';
 
-gulp.task('font:inter', function() {
-  return gulp.src('node_modules/@fontsource/inter/**/*').pipe(replace(/\.\/files\//g, '/static/fonts/inter/files/')).pipe(gulp.dest('web/static/fonts/inter'))
+task('font:inter', function() {
+  return src('node_modules/@fontsource/inter/**/*', { removeBOM: false })
+  .pipe(replace(/\.\/files\//g, '/static/fonts/inter/files/'))
+  .pipe(dest('web/static/fonts/inter'))
 });
 
-gulp.task('font:rasa', function() {
-  return gulp.src('node_modules/@fontsource/rasa/**/*').pipe(replace(/\.\/files\//g, '/static/fonts/rasa/files/')).pipe(gulp.dest('web/static/fonts/rasa'))
+task('font:rasa', function() {
+  return src('node_modules/@fontsource/rasa/**/*', { removeBOM: false })
+  .pipe(replace(/\.\/files\//g, '/static/fonts/rasa/files/'))
+  .pipe(dest('web/static/fonts/rasa'))
 });
 
 
-gulp.task('fontawesome', function(done) {
+task('fontawesome', function(done) {
     deleteSync('web/static/fonts/fontawesome/webfonts', {force:true});
-    fontawesomeSubset.fontawesomeSubset({
+    fontawesomeSubset({
       regular:['circle-play', 'circle-question'],
-      solid: ['triangle-exclamation', 'angle-down', 'circle-pause', 'right-to-bracket', 'users','eye', 'eye-slash', 'arrow-up-right-from-square', 'calendar', 'circle-stop','circle-question', 'circle-notch','circle-xmark', 'circle-check', 'angle-right', 'file-arrow-down', 'circle-info', 'magnifying-glass', 'pen-to-square', 'trash', 'delete-left', 'sort', 'terminal', 'list', 'ban', 'toggle-on', 'toggle-off', 'plus', 'rotate', 'download', 'copy', 'check']
+      solid: ['triangle-exclamation'
+          , 'angle-down'
+          , 'circle-pause'
+          , 'right-to-bracket'
+          , 'users'
+          , 'eye'
+          , 'eye-slash'
+          , 'arrow-up-right-from-square'
+          , 'calendar'
+          , 'circle-stop'
+          , 'circle-question'
+          , 'circle-notch'
+          , 'circle-xmark'
+          , 'circle-check'
+          , 'angle-right'
+          , 'file-arrow-down'
+          , 'circle-info'
+          , 'magnifying-glass'
+          , 'pen-to-square'
+          , 'trash'
+          , 'delete-left'
+          , 'sort'
+          , 'terminal'
+          , 'list'
+          , 'ban'
+          , 'toggle-on'
+          , 'toggle-off'
+          , 'plus'
+          , 'rotate'
+          , 'download'
+          , 'copy'
+          , 'check']
           }, 'web/static/fonts/fontawesome/webfonts')
 
     done();
 });
 
-gulp.task('sass', function() {
-  return gulp.src("web/static/assets/**/*.scss")
+task('sass', function() {
+  const plugins = [
+    cssnano({
+      preset: ['default', { discardComments: false }],
+    }),
+  ];
+  return src("web/static/assets/**/*.scss")
     .pipe(sass().on('error', sass.logError))
+    .pipe(postcss(plugins))
     .pipe(
       purgecss({
-        content: ['web/static/lib/**/*.js', 'web/static/js/**/*.js', 'web/templates/**/*.html.j2', 'runner/templates/**/*.html.j2', 'scheduler/templates/**/*.html.j2'],
-        safelist: ['has-text-success', 'mr-3', 'has-text-warning'],
-        whitelist: ['has-text-success', 'mr-3', 'has-text-warning']
+        content: ['web/static/lib/**/*.js'
+          , 'web/static/js/**/*.js'
+          , 'web/templates/**/*.html.j2'
+          , 'runner/templates/**/*.html.j2'
+          , 'scheduler/templates/**/*.html.j2'
+          , 'web/web/*.py'],
+        safelist: [],
+        whitelist: []
       })
     )
-    .pipe(autoprefexer({
-        overrideBrowserslist: ['last 2 versions']
-    }))
-    .pipe(cssnano())
-    .pipe(gulp.dest('web/static/css/'))
+    .pipe(autoprefexer())
+    .pipe(dest('web/static/css/'))
 });
 
-gulp.task('build', gulp.parallel('font:inter','font:rasa', gulp.series('fontawesome','sass')));
+task('build', parallel('font:inter','font:rasa', series('fontawesome','sass')));
 
-gulp.task('watch', gulp.series('build', function (cb) {
-    gulp.watch('web/static/assets/**/*.scss', gulp.series('sass'));
-    gulp.watch('web/fonts/fontawesome/**/*.scss', gulp.series('fontawesome','sass'));
-    gulp.watch('web/**/*.html*', gulp.series('fontawesome', 'sass'));
+task('watch', series('build', function (cb) {
+    watch('web/static/assets/**/*.scss', series('sass'));
+    watch('web/fonts/fontawesome/**/*.scss', series('fontawesome','sass'));
+    watch('web/**/*.html*', series('fontawesome', 'sass'));
     cb();
 }));

migrations/env.py

@@ -24,29 +24,29 @@
 def get_engine():
     try:
         # this works with Flask-SQLAlchemy<3 and Alchemical
-        return current_app.extensions['migrate'].db.get_engine()
+        return current_app.extensions["migrate"].db.get_engine()
     except TypeError:
         # this works with Flask-SQLAlchemy>=3
-        return current_app.extensions['migrate'].db.engine
+        return current_app.extensions["migrate"].db.engine
 
 
 def get_engine_url():
     try:
         return get_engine().url.render_as_string(hide_password=False).replace(
-            '%', '%%')
+            "%", "%%")
     except AttributeError:
-        return str(get_engine().url).replace('%', '%%')
+        return str(get_engine().url).replace("%", "%%")
 
-config.set_main_option('sqlalchemy.url', get_engine_url())
-target_db = current_app.extensions['migrate'].db
+config.set_main_option("sqlalchemy.url", get_engine_url())
+target_db = current_app.extensions["migrate"].db
 
 # other values from the config, defined by the needs of env.py,
 # can be acquired:
 # my_important_option = config.get_main_option("my_important_option")
 # ... etc.
 
 def get_metadata():
-    if hasattr(target_db, 'metadatas'):
+    if hasattr(target_db, "metadatas"):
         return target_db.metadatas[None]
     return target_db.metadata