GitHub - attilagk/research-tools: Scripts for all my computational genomics research projects

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Scripts for all my computational genomics research projects

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Name		Name	Last commit message	Last commit date
Latest commit History 173 Commits
.gitignore		.gitignore
Rkrdown2synapse		Rkrdown2synapse
align		align
alignX10		alignX10
annotatevcfs.sh		annotatevcfs.sh
backup-all-homes		backup-all-homes
backup-home		backup-home
backup-root		backup-root
backup-work		backup-work
bsmcluster		bsmcluster
build-deploy-notebook		build-deploy-notebook
evince_dbus.py		evince_dbus.py
fastq-stats		fastq-stats
flist2cmdarg		flist2cmdarg
grch37-or-grch38-prepare.sh		grch37-or-grch38-prepare.sh
hostspecific.sh		hostspecific.sh
jsm.vcf.header		jsm.vcf.header
jsm_tsv2vcf.py		jsm_tsv2vcf.py
knit		knit
knit-basic		knit-basic
kramdown2pandoc		kramdown2pandoc
krdown2html		krdown2html
lab-notebook		lab-notebook
lynx4R		lynx4R
mf2vcf.py		mf2vcf.py
multiCaller		multiCaller
myCrossMap		myCrossMap
myCrossMap-log2csv		myCrossMap-log2csv
myJointSNVMix2		myJointSNVMix2
myTnseq		myTnseq
mybcftools-isec-tsv		mybcftools-isec-tsv
mybsub		mybsub
mybwa		mybwa
mylofreq		mylofreq
mymutect2		mymutect2
mysomaticsniper		mysomaticsniper
mystrelka		mystrelka
mystrelka2		mystrelka2
pandoc2kramdown		pandoc2kramdown
parseFASTQheader		parseFASTQheader
parseX10-fnames.1		parseX10-fnames.1
parseX10-fnames.sed		parseX10-fnames.sed
prec-recall-vcf		prec-recall-vcf
prepare4prec-recall		prepare4prec-recall
print-nth-read.sh		print-nth-read.sh
protectmyfiles.sh		protectmyfiles.sh
rename-case-control-samples		rename-case-control-samples
scmindent.rkt		scmindent.rkt
setsizes2prec_recall.py		setsizes2prec_recall.py
sync-bernie		sync-bernie
tags		tags
tmuxlynx		tmuxlynx
tmuxw3m		tmuxw3m
treegraph.sh		treegraph.sh
vcfinfo2tsv		vcfinfo2tsv
vcfsheet		vcfsheet
viewvar		viewvar
vimconfigure.sh		vimconfigure.sh
vimrpager		vimrpager
vnode		vnode
wish		wish