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Clarify that not all configuration options can be overridden by CLI flags #1989
This hasn't been a problem for me, but still seems like a strange limitation. Wouldn't it simplify the code to not special-case the configuration? What's actually gained from doing this?
If the goal is just to encourage people to use best practices, a more prominent suggestion to use package.json in the docs might be a simpler approach. Or a console warning, rather than actually preventing config on the command line.