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  1. flowsig flowsig Public

    Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.

    Python 56

  2. FlowSigAnalysis_2023 FlowSigAnalysis_2023 Public

    Python and R code used to produce the analysis in Almet et al. (2023), "Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics"

    Python 3

  3. FibroblastAnalysis_2023 FibroblastAnalysis_2023 Public

    Python and R code used to produce the analysis in Almet et al. (2023), "Fibroblasts evolve in single-cell state to drive extracellular matrix and signaling changes across wound healing."

    Jupyter Notebook 1 1

  4. axelalmet.github.io axelalmet.github.io Public

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  5. AxelA AxelA Public

    Chaste user project

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  6. MorphoelasticCrypt MorphoelasticCrypt Public

    Code for model development of a growing crypt, based on the morphoelastic rod framework of Moulton et al. (2013)

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