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1. hello-world hello-world Public

   training exercise from https://guides.github.com/activities/hello-world/

2. heterogygous_sites_from_siblings heterogygous_sites_from_siblings Public

   This takes the genotypes of a set of siblings in zarr format and produces a vcf file indicating SNPs that are heterozygous in all of them

   Jupyter Notebook

3. find_consensus_difference find_consensus_difference Public

   Counts the number of sites differing in the consensus sequences (opposite homozygoutes) between sets of Anopheles gambiae.

   Jupyter Notebook

4. traning_sets_IR traning_sets_IR Public

   training sets of Cis regulatory modules operating in tissues important for insecticide resistance, to be used with SCRMshawHD

5. sweeps_ASE sweeps_ASE Public

   checks a list of Anopheles gambiae genes to see if they are in regions where selective sweeps are oberserved

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6. rna-seq-pop rna-seq-pop Public

   Forked from sanjaynagi/rna-seq-pop

   Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

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