aggRmesh

Tools for Accessing NCIBI Web Services in R: aggRmesh

To install:

install.packages("devtools")

source("http://bioconductor.org/biocLite.R")

biocLite("RankAggreg")

devtools::install_github("balcomes/aggRmesh")

Example Usage

library(aggRmesh)

library(dplyr)

mimi(1234)

View(gene2mesh(1234))

View(metab2mesh("phenol"))

View(mesh2gene("Photochemical Processes"))

View(mesh2metab("Photochemical Processes"))

3452:3456 %>% aggrmesh("gene2mesh") %>% aggrmesh("mesh2metab")

gene2mesh(12)$MeSH.Descriptor.Name[1:5] %>% aggrmesh("mesh2metab")

mimi(3558)$InteractingGeneIDs %>% aggrmesh(method="gene2mesh") %>% aggrmesh(method="mesh2metab")

or

library(knitr)

report('gene2mesh(12)$MeSH.Descriptor.Name[1:5] %>% aggrmesh("mesh2metab")')

(Wrap command in single quotes!)