Cell type-specific cis-regulatory divergence in gene expression and chromatin accessibility revealed by human-chimpanzee hybrid cells

This is the code repositry for the preprint. Data availability: GSE232949

Content

• High-confidence_SNV_generation: pipeline for generating high-confidence SNV list between human and chimpanzee.

• RNAseq_pipeline: RNA sequencing data analysis pipeline.

• ATACseq_pipeline: ATAC sequencing data analysis pipeline.

• External_data_analysis: Scripts and data used to demonstarte analysis results on external datasets not produced by this study.

• Main_figures_scripts: Scripts used to generate main figures.

• Supp_figures_scripts: Scripts used to generate supplementary figures.

• Sei_scripts: Scripts used to do analysis involving sequence model Sei.

• data: Processed data used for figure generation.