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@baradlab

baradlab

Barad Lab at OHSU

Welcome to the GitHub organization for software tools developed in the Barad Lab at Oregon Health & Science University

Mission

Our goal is to develop tools to enable integrative structural and cellular biology using Cryo-ET and other technologies, and to share them freely to help the community better study biology across scales.

Software Principles

  1. Unless it is not possible because of dependencies, software will be licensed permissively
  2. We are biologists first, and cannot let the perfect be the enemy of the good. We hope that all of our software will eventually be polished, flexible, and easy to use, but we will not wait for those things to be true before sharing our tools as is!
  3. While this organization will host Barad lab specific tools, we encourage contribution to larger shared organizations, such as teamtomo when the scope of the project is appropriate

Contributors

The Barad lab organization welcomes contributions from outside of the lab. We expect contributors to respect our lab's collaboratively developed compact

Popular repositories Loading

  1. baradlab.github.io baradlab.github.io Public

    Barad Lab Website

    HTML 1 1

  2. surface-morphometrics-gui surface-morphometrics-gui Public

    GUI for Surface Morphometrics Pipeline

    Python 1

  3. CryoFilET CryoFilET Public

    Filament Analysis in CryoET, from Segmentation to Helical STA

  4. surface_morphometrics surface_morphometrics Public

    Forked from GrotjahnLab/surface_morphometrics

    Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.

    Python 1

  5. .github .github Public

  6. michigan_tutorial michigan_tutorial Public

    Segmentation Tutorial for U Michigan

Repositories

Showing 6 of 6 repositories
  • surface-morphometrics-gui Public

    GUI for Surface Morphometrics Pipeline

    baradlab/surface-morphometrics-gui’s past year of commit activity
    Python 1 0 0 1 Updated Nov 16, 2024
  • baradlab.github.io Public

    Barad Lab Website

    baradlab/baradlab.github.io’s past year of commit activity
    HTML 1 BSD-3-Clause 1 0 0 Updated Nov 8, 2024
  • michigan_tutorial Public

    Segmentation Tutorial for U Michigan

    baradlab/michigan_tutorial’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Jun 13, 2024
  • surface_morphometrics Public Forked from GrotjahnLab/surface_morphometrics

    Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.

    baradlab/surface_morphometrics’s past year of commit activity
    Python 0 GPL-3.0 10 0 0 Updated May 28, 2024
  • .github Public
    baradlab/.github’s past year of commit activity
    0 0 0 0 Updated Mar 4, 2024
  • CryoFilET Public

    Filament Analysis in CryoET, from Segmentation to Helical STA

    baradlab/CryoFilET’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 15, 2023

People

This organization has no public members. You must be a member to see who’s a part of this organization.

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