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Jeffrey Barrick edited this page Aug 9, 2021
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OSTIR is a Python package for predicting the rates at which ribosomes will bind to and initiate
translation from different start codons in bacterial mRNAs. The code builds on the last open
source version of the RBS calculator.
Explains the thermodynamic model and shows typical results for E. coli genes.
Methods that are available for installing OSTIR and its dependencies.
How to run OSTIR at the command line with an explanation of input and output file formats.
How to call OSTIR as a Python function with an explanation of parameters and return values.
How you can contribute to improving OSTIR.