Compartmental models of HIV virulence evolution

Understanding effects of epidemiological structure on HIV virulence evolution. Material to accompany Park and Bolker, "Effects of Epidemiological Structure on the Transient Evolution of HIV Virulence" PLoS Computational Biology

• R: simulation model code (including some C++ code)
• figures: code for figures, and output
• latexdiff: executable (only) for generating marked-up diffs of LaTeX files
• ms: text, bibliographic info, etc. for manuscript
• simdata: output from simulation runs