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v1.1.8

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@roryk roryk released this 29 Oct 01:00
· 794 commits to master since this release
  • Add antibody configuration option. Setting a specific antibody for ChIP-seq will use appropriate
    settings for that antibody. See the documentation for supported antibodies.
  • Add use_lowfreq_filter for forcing vardict to report variants with low allelic frequency,
    useful for calling somatic variants in panels with high coverage.
  • Fix for checking for pre-existing inputs with python3.
  • Add keep_duplicates option for ChIP/ATAC-seq which does not remove duplicates before peak calling.
    Defaults to False.
  • Add keep_multimappers for ChIP/ATAC-seq which does not remove multimappers before peak calling.
    Defaults to False.
  • Remove ethnicity as a required column in PED files.