Files not available in testdata

[bogdang989]

Hi @chapmanb
I tried to run the test workflows on SBG platform, however I am unable to run svcall and prealign workflows as some of the files in *samples.json are not present in the testdata folder on the repo.

The files are:

• Test2-gatk-haplotype.vcf.gz (and tbi)
• 6_100326_FC6107FAAXX_2.bam
• Test1-grade.vcf.gz (and tbi)

[chapmanb]

Bogdan;
Thanks so much for the heads up on the missing files and sorry about the issues. I've just updated with all the latest data which will have the files you're missing. This also contains a bunch of in progress work to support more extensive CWL workflows with annotations, ensemble and germline calling. Please let me know if you get stuck with anything else at all.