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Added slow5 parser #220
Added slow5 parser #220
Commits on Oct 29, 2021
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Keoni Gandall committed
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Commits on Oct 31, 2021
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Keoni Gandall committed
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Keoni Gandall committed
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Keoni Gandall committed
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Keoni Gandall committed
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Commits on Jun 21, 2022
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Commits on Jun 29, 2022
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Commits on Jul 16, 2022
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Commits on Sep 6, 2022
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Commits on Sep 11, 2022
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Replaced the Seqhash sequencetype with Struct type argument instead o…
…f a plain string.. (#264) * Replaced the Seqhash sequencetype with Struct type argument instead of a plain string.. * Cleared the linting errors for Go > 1.16 where ioutils package has been depreciated Co-authored-by: Tim <TimothyStiles@users.noreply.github.com>
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Commits on Sep 12, 2022
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fix: Use SliceStable to sort potential changes (#265)
* fix: Use SliceStable to sort potential changes Fixes golang/go#55009 Co-authored-by: Tim <TimothyStiles@users.noreply.github.com>
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created config for gitpod. (#266)
* created config for gitpod. * removed non-existent vscode extennsions. * fixed yml spacing.
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Commits on Sep 19, 2022
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WIP: drafted intro and io tutorials. Added templates for README and s…
…everal other tutorials. (#267) * drafted intro and io tutorials. Added templates for README and several other tutorials. * added logic for tutorial workspace setup detection. * added todos to unwritten tutorial placeholders.
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replacing
code
withgp-code
(#268)* now using gp-code instead of code for opening tutorial windows. * added more to input output tutorial.
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Commits on Sep 20, 2022
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gitpod tutorial commands on startup. (#269)
* added explicit wait for tutorial startup * added comment with issue explaining vscode -r bug.
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Commits on Sep 21, 2022
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Commits on Sep 25, 2022
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Install Go Analysis Tools in Gitpod workspace (#270)
* Install Go Analysis Tools Co-authored-by: Tim <TimothyStiles@users.noreply.github.com>
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Commits on Sep 26, 2022
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Open tutorial README in Gitpod (#271)
* Open tutorial README in Gitpod * Install godef
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Commits on Sep 29, 2022
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Commits on Oct 15, 2022
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Commits on Oct 17, 2022
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Commits on Oct 18, 2022
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Commits on Nov 10, 2022
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Commits on Nov 27, 2022
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Fix README installation method (#282)
New go modules requires version.
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Commits on Nov 29, 2022
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transform: performance and test upgrades (#283)
* added transform tests * added benchmarks * runs 8-10X faster than previous implementation Co-authored-by: Tim <TimothySStiles@gmail.com> Co-authored-by: Timothy Stiles <tim@stiles.io>
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Commits on Dec 15, 2022
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* add more fasta.Parser API * add uniprot fasta creation * add maxLineSize argument to Parser * no EOF newline now invalidates fasta * parse now uses parseall behind the scenes. * fixed fasta.Build to output proper whitespace. * return to EOF as parse error state, fix some other stuff * fix Concurrent functions, ensure they close their readers Co-authored-by: Timothy Stiles <tim@stiles.io>
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Commits on Dec 19, 2022
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Support multiple references separated by newline in rebase file (#285)
palmerito0 committedDec 19, 2022 Configuration menu - View commit details
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Commits on Jan 11, 2023
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Commits on Feb 6, 2023
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adding new alignment package and global alignment via Needleman-Wunsch (
#288) * initial implementation of global alignment via NeedlemanWunsch * test coverage 100% * added wikipedia link for Needleman-Wunsch * added corner case tests at the suggestion of Daniel Liu @daniel_c0deb0t via twitter
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Commits on Feb 20, 2023
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Commits on Feb 24, 2023
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Smith-Waterman Algorithm (#292)
Co-authored-by: Timothy Stiles <tim@stiles.io>
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Commits on Feb 25, 2023
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Commits on Mar 9, 2023
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Commits on Mar 21, 2023
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Commits on Mar 23, 2023
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Merge branch 'main' into slow5
Keoni Gandall committedMar 23, 2023 Configuration menu - View commit details
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