bhattlab
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kraken2_classification
kraken2_classification PublicSnakemake workflow for metagenomic classification with Kraken2
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bhattlab_workflows
bhattlab_workflows PublicComputational workflows for metagenomics tasks, by the Bhatt lab
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StrainSifter
StrainSifter PublicA straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
Repositories
Showing 10 of 28 repositories
- bhattlab_workflows_nf Public
Computational workflows for metagenomics tasks, packaged with Nextflow and Singularity.
bhattlab/bhattlab_workflows_nf’s past year of commit activity - AWIGen2Microbiome Public
Repository for the AWI-Gen 2 microbiome project workflows, analysis, and results.
bhattlab/AWIGen2Microbiome’s past year of commit activity - SmORFinder Public
A command line tool to identify and annotate small proteins in microbial sequencing datasets.
bhattlab/SmORFinder’s past year of commit activity - SouthAfrica Public
bhattlab/SouthAfrica’s past year of commit activity