__------__
/~ ~\
| //^\\//^\|
/~~\ || o| |o|:~\
| |6 ||___|_|_||:|
\__. / o \/'
| ( O )
/~~~~\ \ \ / | |~~\ | ) ~------~
/' | | | / ____ /~~~)
(/' | | | /' | ( |
| | | \ / )/
\ \ \ / /' \ \ __ __ _ _____ ____ _____ \ \|\ / | |\___| | \/ | | | / ____| _ \| __ \ \ | \____/ | | | \ / | ___ _ __ | | _____ _ _| | | |_) | |__) | /^~> \ _/ < | |\/| |/ _ \| '_ \| |/ / _ \ | | | | | _ <| ___/ | | \ \ | | | | (_) | | | | < __/ |_| | |____| |_) | | | | \ \ \ |_| |_|\___/|_| |_|_|\_\___|\__, |\_____|____/|_| -^-\ \ | ) _/^___/
MonkeyCBP (A toolbox for connectivity-based parcellation of monkey brain)
- Multi-ROI oriented brain parcellation
- Automatic parallel computing
- Modular and flexible structure
- Simple and easy-to-use settings
- Usage:
bash MonkeyCBP.sh batch_list.txt
===============================================
- Tools:
- FSL (with FDT toolbox), SGE and MATLAB (with SPM8)
- Data files:
- T1 image for each subject
- b0 image for each subject
- images preprocessed by FSL(BedpostX) for each subject
- Directory structure:
Working_dir
|-- sub1
| |-- T1_sub1.nii
| |-- b0_sub1.nii
|-- ...
|-- subN
| |-- T1_subN.nii
| |-- b0_subN.nii
|-- ROI
| |-- ROI_L.nii
| `-- ROI_R.nii
`-- log
===============================================