make to-dos from description

[skim2257]

To-do

• Write documentation for H4H Public/Processed/Internal_Datasets management

• Integrate docstring into official repo docs

• [CARYN] QC checks to output FAILURE

  • assert image.shape == theoretical_shape
    • ex) assert spacing = image.GetSpacing()
    • ex) spacing = 1, 1, 2 -> orig_img.shape / spacing = image.GetSpacing()

• [SEJIN]

  • RTSTRUCT QC
    • does contour fall within image bounds
  • post List of Med-ImageNet/Public datasets on slack

• [UMAR/KATY] DICOM-SEG Loading

  • Padding for empty slices
  • Handling multiple contours
  • Segmentation QC tests !

• [JOE/JOSH] Data versioning by creating symbolic links
  - multiple versions
  - nnU-Net symbolic link
  - dump raw name, make links of TG-263 names

  • Change nnUNet output to nnUNet-v2 format
    • maybe just another flag to additionally support v2
    • maybe add symbolic link

• [RUIYAN] Mask from RTSTRUCT to output/export