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Allow piped commands to timeout #1875

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fnothaft opened this Issue Jan 16, 2018 · 0 comments

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Completed in Release 0.24.0
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  0.24.0
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fnothaft commented Jan 16, 2018

This is useful for some commands where runtime is not consistent across all regions.

@fnothaft fnothaft added the enhancement label Jan 16, 2018

@fnothaft fnothaft added this to the 0.24.0 milestone Jan 16, 2018

@fnothaft fnothaft self-assigned this Jan 16, 2018

fnothaft added a commit to fnothaft/adam that referenced this issue Jan 22, 2018

@fnothaft
[ADAM-1875] Add ability to timeout a piped command. 
Resolves bigdatagenomics#1875. Adds an optional timeout parameter to the `GenomicRDD.pipe`
function. If this is provided, a command will be killed (but without failing the
Spark task) if it runs for longer than the timeout parameter.
597516f

@fnothaft fnothaft referenced this issue Jan 22, 2018

Merged

[ADAM-1875] Add ability to timeout a piped command. #1881

fnothaft added a commit to fnothaft/adam that referenced this issue Jan 22, 2018

@fnothaft
[ADAM-1875] Add ability to timeout a piped command. 
Resolves bigdatagenomics#1875. Adds an optional timeout parameter to the `GenomicRDD.pipe`
function. If this is provided, a command will be killed (but without failing the
Spark task) if it runs for longer than the timeout parameter.
5a01aa7

fnothaft added a commit to fnothaft/adam that referenced this issue Jan 24, 2018

@fnothaft
[ADAM-1875] Add ability to timeout a piped command. 
Resolves bigdatagenomics#1875. Adds an optional timeout parameter to the `GenomicRDD.pipe`
function. If this is provided, a command will be killed (but without failing the
Spark task) if it runs for longer than the timeout parameter.
bca5018

fnothaft added a commit to fnothaft/adam that referenced this issue Jan 24, 2018

@fnothaft
[ADAM-1875] Add ability to timeout a piped command. 
Resolves bigdatagenomics#1875. Adds an optional timeout parameter to the `GenomicRDD.pipe`
function. If this is provided, a command will be killed (but without failing the
Spark task) if it runs for longer than the timeout parameter.
db40096

@heuermh heuermh closed this in #1881 Jan 25, 2018

heuermh added a commit that referenced this issue Jan 25, 2018

@fnothaft @heuermh
[ADAM-1875] Add ability to timeout a piped command. 
Resolves #1875. Adds an optional timeout parameter to the `GenomicRDD.pipe`
function. If this is provided, a command will be killed (but without failing the
Spark task) if it runs for longer than the timeout parameter.
adff336

@heuermh heuermh added this to Completed in Release 0.24.0 Feb 10, 2018

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