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[ADAM-1469] Don't filter on whether reads have mismatches during realignment #1470

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merged 1 commit into from Apr 3, 2017

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fnothaft commented Apr 3, 2017

Resolves #1469. Provides approximately a 1% bump in both INDEL calling precision and recall.

[ADAM-1469] Don't filter on whether reads have mismatches during real…
…ignment

Resolves #1469. Provides approximately a 1% bump in both INDEL calling precision
and recall.

@fnothaft fnothaft added this to the 0.22.0 milestone Apr 3, 2017

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coveralls Apr 3, 2017

Coverage Status

Coverage increased (+0.03%) to 81.613% when pulling 3670c7e on fnothaft:issues/1469-realign-all into a70c371 on bigdatagenomics:master.

coveralls commented Apr 3, 2017

Coverage Status

Coverage increased (+0.03%) to 81.613% when pulling 3670c7e on fnothaft:issues/1469-realign-all into a70c371 on bigdatagenomics:master.

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AmplabJenkins Apr 3, 2017

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1926/
Test PASSed.

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/ADAM-prb/1926/
Test PASSed.

@heuermh

heuermh approved these changes Apr 3, 2017

@heuermh heuermh merged commit 8df3aa2 into bigdatagenomics:master Apr 3, 2017

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codacy/pr Good work! A positive pull request.
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coverage/coveralls Coverage increased (+0.03%) to 81.613%
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default Merged build finished.
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