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[ADAM-2145] Add Spark 2.4.3 and Scala 2.12 to Jenkins build #2149
[ADAM-2145] Add Spark 2.4.3 and Scala 2.12 to Jenkins build #2149
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Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 98085e3 # timeout=10Checking out Revision 98085e3 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 98085e3e948dc5cd7a5ee5ca74689e44e96b2038First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 0d6565b # timeout=10Checking out Revision 0d6565b (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 0d6565b036217e99af3454b3fcb49a90c1ff6ee0First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 3718c8d # timeout=10Checking out Revision 3718c8d (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 3718c8d21eb71b332d4cb15a65a62054d27f210fFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 26bf669 # timeout=10Checking out Revision 26bf669 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 26bf66931a4c4bfb5f49f27d5dc0967ca3493575First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 08944b4 # timeout=10Checking out Revision 08944b4 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 08944b44bddbba2bea95b14b8e9631eb95c0205aFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 6ee9ab9 # timeout=10Checking out Revision 6ee9ab9 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 6ee9ab951e276e23f45f21deb458d206f12d3d36First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 1f4f66d # timeout=10Checking out Revision 1f4f66d (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 1f4f66dcee6a8a4c72bbf0e93421e60d60b54b5eFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 8f09a55 # timeout=10Checking out Revision 8f09a55 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 8f09a5504fee4f06243a20b42b534b17aef33d46First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 646d138 # timeout=10Checking out Revision 646d138 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 646d138fa281f24592dba23dfac1851c61b354f8First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
@@ -588,6 +588,11 @@ | |||
<artifactId>adam-codegen-spark2_${scala.version.prefix}</artifactId> | |||
<version>${project.version}</version> | |||
</dependency> | |||
<dependency> | |||
<groupId>com.thoughtworks.paranamer</groupId> |
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What are you using this for?
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Ahh I see
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It's been very frustrating dealing with the Spark folks, they keep going fast and breaking things without cleaning up any of the dependency mess left in the wake.
"But it all seems to work in a quick test."
Good thing there aren't any projects downstream of Spark.
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 18b4c43 # timeout=10Checking out Revision 18b4c43 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 18b4c43132ac49c2c3c64bf230086a74187c794dFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 9893847 # timeout=10Checking out Revision 9893847 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 9893847a23c61ae931e2881cbda0506ec81b2eb1First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 10cacb9 # timeout=10Checking out Revision 10cacb9 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 10cacb972bef001742bbacf130ca5e98052b42ebFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 39375fa # timeout=10Checking out Revision 39375fa (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 39375fa95d1855d87d065faee72e616c2a0dac27First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains c49ba42 # timeout=10Checking out Revision c49ba42 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f c49ba426e1993635b92693e7cf4ecf67ec8cd43bFirst time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result FAILURENotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 5906981 # timeout=10Checking out Revision 5906981 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 5906981ec3080b590e73d868753042b644cf1985First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 124c553 # timeout=10Checking out Revision 124c553 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 124c553770be973e6f9fc5dca2bbeb8cd73b3ea9First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
Jenkins, retest this please |
Test FAILed. Build result: FAILURE[...truncated 3 lines...]Building remotely on amp-jenkins-worker-05 (centos spark-test) in workspace /home/jenkins/workspace/ADAM-prbWiping out workspace first.Cloning the remote Git repositoryCloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/:refs/remotes/origin/ # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/:refs/remotes/origin/ # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/:refs/remotes/origin/pr/ # timeout=15 > git rev-parse origin/pr/2149/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains 124c553 # timeout=10Checking out Revision 124c553 (origin/pr/2149/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 124c553770be973e6f9fc5dca2bbeb8cd73b3ea9First time build. Skipping changelog.Triggering ADAM-prb ? 2.7.5,2.12,2.4.3,ubuntuTriggering ADAM-prb ? 2.7.5,2.11,2.4.3,ubuntuADAM-prb ? 2.7.5,2.12,2.4.3,ubuntu completed with result FAILUREADAM-prb ? 2.7.5,2.11,2.4.3,ubuntu completed with result SUCCESSNotifying endpoint 'HTTP:https://webhooks.gitter.im/e/ac8bb6e9f53357bc8aa8'Test FAILed. |
@fnothaft I'm very confused by the most recent Jenkins test failure. It says that avro
but that class is present in the ADAM assembly jar
as
I can also reproduce locally. |
Test PASSed. |
Fixes #2145