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[ADAM-934] Properly handle unset library name during duplicate marking #935

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[ADAM-934] Properly handle unset library name during duplicate marking #935

wants to merge 1 commit into from

Commits on Feb 9, 2016

  1. [ADAM-934] Properly handle unset library name during duplicate marking 

    Resolves bigdatagenomics#934. If the library name for a read group is not set, we will use a
null string during the groupBy. This is equivalent to our pre-bigdatagenomics#906
implementation. Additionally, this commit adds logging that prints a warning
message for the user if there are read groups whose library ID is not set.
    @fnothaft
    fnothaft committed Feb 9, 2016
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